2019-04-11 16:52:10 +00:00
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<?php
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2021-05-18 11:17:29 +00:00
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2019-04-11 16:52:10 +00:00
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namespace App\Http\Controllers\Publish;
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use App\Exceptions\GeneralException;
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use App\Http\Controllers\Controller;
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2020-02-25 12:09:49 +00:00
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use App\Http\Requests\DocumentRequest;
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2019-04-11 16:52:10 +00:00
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use App\Models\Dataset;
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2019-05-28 17:02:21 +00:00
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use App\Models\DatasetReference;
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2020-02-25 12:09:49 +00:00
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use App\Models\Description;
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2019-05-28 11:12:20 +00:00
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use App\Models\File;
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2020-02-25 12:09:49 +00:00
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use App\Models\License;
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use App\Models\Person;
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use App\Models\Project;
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use App\Models\Subject;
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use App\Models\Title;
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use App\Models\User;
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use App\Rules\RdrFilesize;
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use App\Rules\RdrFiletypes;
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// use Illuminate\View\View;
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use Carbon\Carbon;
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2019-04-11 16:52:10 +00:00
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use Illuminate\Http\RedirectResponse;
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use Illuminate\Http\Request;
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use Illuminate\Support\Facades\Auth;
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use Illuminate\Support\Facades\DB;
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2020-01-27 14:06:37 +00:00
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use Illuminate\Support\Facades\Storage;
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2019-05-27 16:52:44 +00:00
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use Illuminate\Support\Facades\Validator;
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2020-02-25 12:09:49 +00:00
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use Illuminate\Support\Facades\View;
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2019-12-20 10:44:40 +00:00
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use \Exception;
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2020-05-05 20:13:10 +00:00
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use Illuminate\Support\Facades\Config;
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2019-04-11 16:52:10 +00:00
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2021-05-18 11:17:29 +00:00
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use App\Models\DatasetIdentifier;
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use App\Models\Oai\OaiModelError;
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use App\Exceptions\OaiModelException;
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use App\Interfaces\DoiInterface;
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2019-04-11 16:52:10 +00:00
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class EditorController extends Controller
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{
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2021-05-18 11:17:29 +00:00
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/**
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* Holds xml representation of document information to be processed.
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*
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* @var \DomDocument Defaults to null.
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*/
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protected $xml = null;
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/**
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* Holds the stylesheet for the transformation.
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*
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* @var \DomDocument Defaults to null.
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*/
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protected $xslt = null;
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/**
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* Holds the xslt processor.
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*
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* @var \XSLTProcessor Defaults to null.
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*/
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protected $proc = null;
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public function __construct(DoiInterface $DoiClient)
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2019-04-11 16:52:10 +00:00
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{
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2021-05-18 11:17:29 +00:00
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$this->doiClient = $DoiClient;
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2019-04-11 16:52:10 +00:00
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//$this->middleware('auth');
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2021-05-18 11:17:29 +00:00
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$this->xml = new \DomDocument();
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$this->proc = new \XSLTProcessor();
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2019-04-11 16:52:10 +00:00
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}
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/**
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* Display a listing of released and accepted datasets.
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*
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* @return \Illuminate\Http\Response
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*/
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2019-12-20 10:44:40 +00:00
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public function index(): \Illuminate\Contracts\View\View
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2019-04-11 16:52:10 +00:00
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{
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$user = Auth::user();
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$user_id = $user->id;
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$builder = Dataset::query();
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//"select * from [documents] where [server_state] in (?) or ([server_state] = ? and [editor_id] = ?)"
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$datasets = $builder
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2021-05-18 11:17:29 +00:00
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2020-02-25 12:09:49 +00:00
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->where('server_state', 'released')
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// ->whereIn('server_state', ['released'])
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->orWhere(function ($query) use ($user_id) {
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$query->whereIn('server_state', ['editor_accepted', 'rejected_reviewer', 'reviewed', 'published'])
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->where('editor_id', $user_id)->doesntHave('identifier', 'and');
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2020-02-25 12:09:49 +00:00
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})
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->orderBy('server_date_modified', 'desc')
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->get();
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2020-01-23 16:52:26 +00:00
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// return View::make('workflow.editor.index', compact('datasets'));
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return View::make('workflow.editor.index', [
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'datasets' => $datasets,
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]);
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2019-04-11 16:52:10 +00:00
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}
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/**
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* Display the specified resource.
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*
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* @param int $id
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* @return \Illuminate\View\View
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*/
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2019-12-20 10:44:40 +00:00
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public function receive($id): \Illuminate\Contracts\View\View
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2019-04-11 16:52:10 +00:00
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{
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$dataset = Dataset::with('user:id,login')->findOrFail($id);
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2019-12-20 10:44:40 +00:00
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return View::make('workflow.editor.receive', [
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2019-04-11 16:52:10 +00:00
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'dataset' => $dataset,
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]);
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}
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2019-04-17 14:01:38 +00:00
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public function receiveUpdate(Request $request, $id)
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2019-04-11 16:52:10 +00:00
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{
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$dataset = Dataset::findOrFail($id);
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2020-02-25 12:09:49 +00:00
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2019-04-11 16:52:10 +00:00
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try {
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$dataset->setServerState("editor_accepted");
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$user = Auth::user();
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$dataset->editor()->associate($user)->save();
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$dataset->save();
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// return redirect()->back();
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return redirect()->route('publish.workflow.editor.index');
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} catch (Exception $e) {
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throw new GeneralException(trans('exceptions.publish.accept.update_error'));
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}
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}
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/**
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* Show the form for editing the specified resource.
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*
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* @param int $id
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* @return \Illuminate\Http\Response
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*/
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2019-12-20 10:44:40 +00:00
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public function edit($id): \Illuminate\Contracts\View\View
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2019-04-11 16:52:10 +00:00
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{
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2020-01-27 14:06:37 +00:00
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$dataset = Dataset::findOrFail($id);
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2020-01-23 16:52:26 +00:00
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$dataset->load('licenses', 'authors', 'contributors', 'titles', 'abstracts', 'files', 'coverage', 'subjects', 'references');
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2019-04-11 16:52:10 +00:00
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2020-01-23 16:52:26 +00:00
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$titleTypes = ['Main' => 'Main', 'Sub' => 'Sub', 'Alternative' => 'Alternative', 'Translated' => 'Translated', 'Other' => 'Other'];
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2021-05-18 11:17:29 +00:00
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$descriptionTypes = [
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'Abstract' => 'Abstract', 'Methods' => 'Methods', 'Series_information' => 'Series_information',
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'Technical_info' => 'Technical_info', 'Translated' => 'Translated', 'Other' => 'Other'
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];
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2020-01-23 16:52:26 +00:00
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$languages = DB::table('languages')
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->where('active', true)
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->pluck('part1', 'part1');
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2020-01-28 16:59:52 +00:00
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$messages = DB::table('messages')
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2020-02-25 12:09:49 +00:00
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->pluck('help_text', 'metadata_element');
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2020-01-28 16:59:52 +00:00
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2019-04-11 16:52:10 +00:00
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$projects = Project::pluck('label', 'id');
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$datum = date('Y-m-d');
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$nowYear = substr($datum, 0, 4);
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$years = array();
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for ($jahr = 1990; $jahr <= $nowYear; $jahr++) {
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$years[$jahr] = $jahr;
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}
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$languages = DB::table('languages')
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->where('active', true)
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->pluck('part1', 'part1');
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2021-05-18 11:17:29 +00:00
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2020-05-05 20:13:10 +00:00
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$contributorTypes = Config::get('enums.contributor_types');
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2020-10-22 14:36:43 +00:00
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$nameTypes = Config::get('enums.name_types');
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2020-02-25 12:09:49 +00:00
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2019-12-20 10:44:40 +00:00
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// $options = License::all('id', 'name_long');
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$licenses = License::select('id', 'name_long', 'link_licence')
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2020-01-23 16:52:26 +00:00
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->orderBy('sort_order')
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->get();
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// $checkeds = $dataset->licenses->pluck('id')->toArray();
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2019-12-20 10:44:40 +00:00
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$checkeds = $dataset->licenses->first()->id;
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2020-02-25 12:09:49 +00:00
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2019-05-28 11:12:20 +00:00
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$keywordTypes = ['uncontrolled' => 'uncontrolled', 'swd' => 'swd'];
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2020-01-23 16:52:26 +00:00
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$referenceTypes = ["rdr-id", "doi", "handle", "isbn", "issn", "url", "urn"];
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2019-05-28 17:02:21 +00:00
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$referenceTypes = array_combine($referenceTypes, $referenceTypes);
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2021-05-18 11:17:29 +00:00
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$relationTypes = [
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"IsSupplementTo", "IsSupplementedBy", "IsContinuedBy", "Continues",
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"IsNewVersionOf", "IsPartOf", "HasPart", "Compiles", "IsVariantFormOf"
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];
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2019-05-28 17:02:21 +00:00
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$relationTypes = array_combine($relationTypes, $relationTypes);
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2019-12-20 10:44:40 +00:00
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return View::make(
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2019-04-11 16:52:10 +00:00
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'workflow.editor.edit',
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2019-05-28 17:02:21 +00:00
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compact(
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'dataset',
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2020-01-23 16:52:26 +00:00
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'titleTypes',
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'descriptionTypes',
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2020-05-05 20:13:10 +00:00
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'contributorTypes',
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2020-10-22 14:36:43 +00:00
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'nameTypes',
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2020-01-23 16:52:26 +00:00
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'languages',
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2020-01-28 16:59:52 +00:00
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'messages',
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2019-05-28 17:02:21 +00:00
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'projects',
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2019-12-20 10:44:40 +00:00
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'licenses',
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2019-05-28 17:02:21 +00:00
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'checkeds',
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'years',
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'languages',
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'keywordTypes',
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'referenceTypes',
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'relationTypes'
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)
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2019-04-11 16:52:10 +00:00
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);
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}
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//https://stackoverflow.com/questions/17480200/using-laravel-how-do-i-create-a-view-that-will-update-a-one-to-many-relationshi?rq=1
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// https://laravel.io/forum/06-11-2014-how-to-save-eloquent-model-with-relations-in-one-go
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/**
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* Update the specified resource in storage.
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*
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* @param \Illuminate\Http\Request $request
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* @param int $id
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* @return \Illuminate\Http\Response
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*/
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public function update(DocumentRequest $request, $id): RedirectResponse
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{
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2019-05-27 16:52:44 +00:00
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$rules = [
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2020-01-23 16:52:26 +00:00
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'type' => 'required|min:3',
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'titles.*.value' => 'required|min:4|max:255',
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'titles.*.language' => 'required',
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'descriptions.*.value' => 'required|min:4|max:2500',
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'descriptions.*.language' => 'required',
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'coverage.x_min' => [
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'required',
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2020-02-25 12:09:49 +00:00
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'regex:/^[-]?((((1[0-7][0-9])|([0-9]?[0-9]))\.(\d+))|180(\.0+)?)$/',
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2019-05-27 16:52:44 +00:00
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],
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2020-01-23 16:52:26 +00:00
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'coverage.y_min' => [
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'required',
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2020-02-25 12:09:49 +00:00
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'regex:/^[-]?(([0-8]?[0-9])\.(\d+))|(90(\.0+)?)$/',
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2019-05-27 16:52:44 +00:00
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],
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2020-01-23 16:52:26 +00:00
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'coverage.x_max' => [
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'required',
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2020-02-25 12:09:49 +00:00
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'regex:/^[-]?((((1[0-7][0-9])|([0-9]?[0-9]))\.(\d+))|180(\.0+)?)$/',
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2019-05-27 16:52:44 +00:00
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],
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2020-01-23 16:52:26 +00:00
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'coverage.y_max' => [
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'required',
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2020-02-25 12:09:49 +00:00
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'regex:/^[-]?(([0-8]?[0-9])\.(\d+))|(90(\.0+)?)$/',
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2019-05-27 16:52:44 +00:00
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],
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2020-02-25 12:09:49 +00:00
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'subjects' => 'required|array|min:3',
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2020-01-23 16:52:26 +00:00
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'subjects.*.value' => 'required|string',
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'subjects.*.type' => 'required|string',
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2020-02-25 12:09:49 +00:00
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'files' => 'required|array|min:1',
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2020-01-23 16:52:26 +00:00
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'files.*.label' => 'required|string',
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];
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$customMessages = [
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'subjects.min' => 'Minimal three keywords are required.',
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'subjects.*.type.required' => 'The types of all keywords are required.',
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'files.min' => 'Minimal one file is required.',
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2019-05-27 16:52:44 +00:00
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];
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2020-01-23 16:52:26 +00:00
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if (null != $request->file('files')) {
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$data = $request->all();
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$files = count($request->input('files')) - 1;
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foreach (range(0, $files) as $index) {
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// $rules['files.' . $index] = 'image|max:2048';
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$rules['files.' . $index . '.file'] = [new RdrFilesize($index + 1), 'file', new RdrFiletypes()];
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}
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}
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$validator = Validator::make($request->all(), $rules, $customMessages);
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2019-12-20 10:44:40 +00:00
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if (!$validator->fails()) {
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2019-05-27 16:52:44 +00:00
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$dataset = Dataset::findOrFail($id);
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$data = $request->all();
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2020-01-23 16:52:26 +00:00
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$input = $request->except(
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'abstracts',
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'licenses',
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'authors',
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'contributors',
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'titles',
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'coverage',
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'subjects',
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'references',
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'files'
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);
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2019-05-27 16:52:44 +00:00
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$licenses = $request->input('licenses');
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//$licenses = $input['licenses'];
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$dataset->licenses()->sync($licenses);
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2020-01-23 16:52:26 +00:00
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$dataset->authors()->sync([]);
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//store authors
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if (isset($data['authors'])) {
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// $data_to_sync = [];
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$index = 0;
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foreach ($request->get('authors') as $key => $person) {
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$pivot_data = ['role' => 'author', 'sort_order' => $index + 1, 'allow_email_contact' => false];
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// if ($galery_id == $request->get('mainPicture')) $pivot_data = ['main' => 1];
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if (isset($person['id'])) {
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// $data_to_sync[$person['id']] = $pivot_data;
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$dataset->persons()->attach($person['id'], $pivot_data);
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} else {
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$dataPerson = new Person($person);
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$dataPerson->status = true;
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2020-10-22 14:36:43 +00:00
|
|
|
// $dataPerson->name_type = "Organizational";
|
2020-01-23 16:52:26 +00:00
|
|
|
$dataset->persons()->save($dataPerson, $pivot_data);
|
|
|
|
}
|
|
|
|
$index++;
|
|
|
|
}
|
|
|
|
// $dataset->persons()->sync($data_to_sync);
|
|
|
|
}
|
|
|
|
|
|
|
|
$dataset->contributors()->sync([]);
|
|
|
|
//store contributors
|
|
|
|
if (isset($data['contributors'])) {
|
|
|
|
// $data_to_sync = [];
|
|
|
|
$index = 0;
|
|
|
|
foreach ($request->get('contributors') as $key => $person) {
|
|
|
|
$pivot_data = ['role' => 'contributor', 'sort_order' => $index + 1, 'allow_email_contact' => false];
|
2020-05-05 20:13:10 +00:00
|
|
|
$pivot_data = array_merge($pivot_data, $person['pivot']);
|
2020-01-23 16:52:26 +00:00
|
|
|
// if ($galery_id == $request->get('mainPicture')) $pivot_data = ['main' => 1];
|
|
|
|
if (isset($person['id'])) {
|
|
|
|
// $data_to_sync[$person['id']] = $pivot_data;
|
|
|
|
$dataset->persons()->attach($person['id'], $pivot_data);
|
|
|
|
} else {
|
|
|
|
$dataPerson = new Person($person);
|
|
|
|
$dataPerson->status = true;
|
2020-10-22 14:36:43 +00:00
|
|
|
// $dataPerson->name_type = "Organizational";
|
2020-01-23 16:52:26 +00:00
|
|
|
$dataset->persons()->save($dataPerson, $pivot_data);
|
|
|
|
}
|
|
|
|
$index++;
|
|
|
|
}
|
|
|
|
// $dataset->persons()->sync($data_to_sync);
|
|
|
|
}
|
|
|
|
|
2019-05-27 16:52:44 +00:00
|
|
|
//save the titles:
|
|
|
|
$titles = $request->input('titles');
|
|
|
|
if (is_array($titles) && count($titles) > 0) {
|
|
|
|
foreach ($titles as $key => $formTitle) {
|
2020-01-23 16:52:26 +00:00
|
|
|
// if (isset($key) && $key != 'undefined') {
|
|
|
|
if (isset($formTitle['id'])) {
|
|
|
|
$title = Title::findOrFail($formTitle['id']);
|
|
|
|
$title->value = $formTitle['value'];
|
|
|
|
$title->language = $formTitle['language'];
|
|
|
|
$title->type = $formTitle['type'];
|
|
|
|
if ($title->isDirty()) {
|
|
|
|
$title->save();
|
|
|
|
}
|
|
|
|
} else {
|
|
|
|
$title = new Title($formTitle);
|
|
|
|
$dataset->titles()->save($title);
|
|
|
|
}
|
2019-05-27 16:52:44 +00:00
|
|
|
}
|
2019-04-11 16:52:10 +00:00
|
|
|
}
|
|
|
|
|
2019-05-27 16:52:44 +00:00
|
|
|
//save the abstracts:
|
|
|
|
$abstracts = $request->input('abstracts');
|
|
|
|
if (is_array($abstracts) && count($abstracts) > 0) {
|
|
|
|
foreach ($abstracts as $key => $formAbstract) {
|
2020-01-23 16:52:26 +00:00
|
|
|
// if (isset($key) && $key != 'undefined') {
|
|
|
|
if (isset($formAbstract['id'])) {
|
|
|
|
$abstract = Description::findOrFail($formAbstract['id']);
|
|
|
|
$abstract->value = $formAbstract['value'];
|
|
|
|
$abstract->language = $formAbstract['language'];
|
|
|
|
if ($abstract->isDirty()) {
|
|
|
|
$abstract->save();
|
|
|
|
}
|
|
|
|
} else {
|
|
|
|
$abstract = new Description($formAbstract);
|
|
|
|
$dataset->abstracts()->save($abstract);
|
|
|
|
}
|
2019-05-27 16:52:44 +00:00
|
|
|
}
|
2019-04-11 16:52:10 +00:00
|
|
|
}
|
|
|
|
|
2019-05-28 17:02:21 +00:00
|
|
|
//save the references:
|
|
|
|
$references = $request->input('references');
|
|
|
|
if (is_array($references) && count($references) > 0) {
|
|
|
|
foreach ($references as $key => $formReference) {
|
2020-01-23 16:52:26 +00:00
|
|
|
// if (isset($key) && $key != 'undefined') {
|
|
|
|
if (isset($formReference['id'])) {
|
|
|
|
$reference = DatasetReference::findOrFail($formReference['id']);
|
|
|
|
$reference->value = $formReference['value'];
|
|
|
|
$reference->label = $formReference['label'];
|
|
|
|
$reference->type = $formReference['type'];
|
|
|
|
$reference->relation = $formReference['relation'];
|
|
|
|
if ($reference->isDirty()) {
|
|
|
|
$reference->save();
|
|
|
|
}
|
|
|
|
} else {
|
|
|
|
$reference = new DatasetReference($formReference);
|
|
|
|
$dataset->references()->save($reference);
|
|
|
|
}
|
2019-05-28 17:02:21 +00:00
|
|
|
}
|
|
|
|
}
|
|
|
|
|
2019-05-28 11:12:20 +00:00
|
|
|
//save the keywords:
|
2020-01-23 16:52:26 +00:00
|
|
|
$keywords = $request->input('subjects');
|
2019-05-28 11:12:20 +00:00
|
|
|
if (is_array($keywords) && count($keywords) > 0) {
|
|
|
|
foreach ($keywords as $key => $formKeyword) {
|
2020-01-23 16:52:26 +00:00
|
|
|
if (isset($formKeyword['id'])) {
|
|
|
|
$subject = Subject::findOrFail($formKeyword['id']);
|
|
|
|
$subject->value = $formKeyword['value'];
|
|
|
|
$subject->type = $formKeyword['type'];
|
|
|
|
if ($subject->isDirty()) {
|
|
|
|
$subject->save();
|
|
|
|
}
|
|
|
|
} else {
|
|
|
|
$subject = new Subject($formKeyword);
|
|
|
|
$dataset->subjects()->save($subject);
|
|
|
|
}
|
2019-05-28 11:12:20 +00:00
|
|
|
}
|
|
|
|
}
|
|
|
|
|
|
|
|
//save the files:
|
2020-01-23 16:52:26 +00:00
|
|
|
$files = $request->get('files');
|
|
|
|
// $files = $request->file('files');
|
2019-05-28 11:12:20 +00:00
|
|
|
if (is_array($files) && count($files) > 0) {
|
2020-01-23 16:52:26 +00:00
|
|
|
$index = 1;
|
2019-05-28 11:12:20 +00:00
|
|
|
foreach ($files as $key => $formFile) {
|
2020-01-23 16:52:26 +00:00
|
|
|
// if (isset($key) && $key != 'undefined') {
|
|
|
|
if (isset($formFile['id'])) {
|
|
|
|
$file = File::findOrFail($formFile['id']);
|
|
|
|
$file->label = $formFile['label'];
|
|
|
|
if ($file->isDirty()) {
|
|
|
|
$file->save();
|
|
|
|
}
|
|
|
|
} else {
|
|
|
|
$uploads = $request->file('uploads');
|
|
|
|
$fileIndex = $formFile['file'];
|
|
|
|
$file = $uploads[$fileIndex];
|
|
|
|
|
|
|
|
// $file = new \Illuminate\Http\UploadedFile($file);
|
|
|
|
$label = urldecode($formFile['label']);
|
2020-02-25 12:09:49 +00:00
|
|
|
$sort_order = $index; //$formFile['sort_order'];
|
2020-01-23 16:52:26 +00:00
|
|
|
$fileName = "file-" . time() . '.' . $file->getClientOriginalExtension();
|
|
|
|
$mimeType = $file->getMimeType();
|
|
|
|
$datasetFolder = 'files/' . $dataset->id;
|
|
|
|
$path = $file->storeAs($datasetFolder, $fileName);
|
|
|
|
$size = Storage::size($path);
|
|
|
|
//$path = Storage::putFile('files', $image, $fileName);
|
|
|
|
$fileDb = new File([
|
|
|
|
'path_name' => $path,
|
|
|
|
'file_size' => $size,
|
|
|
|
'mime_type' => $mimeType,
|
|
|
|
'label' => $label,
|
|
|
|
'sort_order' => $sort_order,
|
|
|
|
'visible_in_frontdoor' => 1,
|
2020-02-25 12:09:49 +00:00
|
|
|
'visible_in_oai' => 1,
|
2020-01-23 16:52:26 +00:00
|
|
|
]);
|
|
|
|
//$test = $file->path_name;
|
|
|
|
$dataset->files()->save($fileDb);
|
|
|
|
$fileDb->createHashValues();
|
|
|
|
}
|
|
|
|
$index++;
|
2019-05-28 11:12:20 +00:00
|
|
|
}
|
|
|
|
}
|
|
|
|
|
2019-05-27 16:52:44 +00:00
|
|
|
// save coverage
|
2020-01-23 16:52:26 +00:00
|
|
|
if (isset($data['coverage']) && !$this->containsOnlyNull($data['coverage'])) {
|
2019-05-27 16:52:44 +00:00
|
|
|
$formCoverage = $request->input('coverage');
|
|
|
|
$coverage = $dataset->coverage()->updateOrCreate(
|
|
|
|
['dataset_id' => $dataset->id],
|
|
|
|
$formCoverage
|
|
|
|
);
|
2020-01-23 16:52:26 +00:00
|
|
|
} elseif (isset($data['coverage']) && $this->containsOnlyNull($data['coverage'])
|
2021-05-18 11:17:29 +00:00
|
|
|
&& !is_null($dataset->coverage)
|
|
|
|
) {
|
2020-01-23 16:52:26 +00:00
|
|
|
$dataset->coverage()->delete();
|
2019-05-27 16:52:44 +00:00
|
|
|
}
|
|
|
|
|
2020-01-23 16:52:26 +00:00
|
|
|
$dataset->fill($input);
|
|
|
|
// $dataset->creating_corporation = "Peter";
|
|
|
|
|
|
|
|
if (!$dataset->isDirty()) {
|
2019-05-27 16:52:44 +00:00
|
|
|
$time = new \Illuminate\Support\Carbon();
|
|
|
|
$dataset->setUpdatedAt($time);
|
|
|
|
}
|
|
|
|
// $dataset->save();
|
|
|
|
if ($dataset->update($input)) {
|
|
|
|
//event(new DatasetUpdated($dataset));
|
|
|
|
session()->flash('flash_message', 'You have updated 1 dataset!');
|
|
|
|
return redirect()->route('publish.workflow.editor.index');
|
|
|
|
}
|
2019-05-28 11:12:20 +00:00
|
|
|
} else {
|
2019-05-27 16:52:44 +00:00
|
|
|
//TODO Handle validation error
|
|
|
|
//pass validator errors as errors object for ajax response
|
|
|
|
// return response()->json([
|
|
|
|
// 'success' => false,
|
|
|
|
// 'errors' => $validator->errors()->all(),
|
|
|
|
// ], 422);
|
2020-01-23 16:52:26 +00:00
|
|
|
// $errors = $validator->errors();
|
|
|
|
return back()->withErrors($validator);
|
2020-02-25 12:09:49 +00:00
|
|
|
// return redirect()->route('publish.workflow.submit.edit', ['id' => $id])->withInput()
|
|
|
|
// ->withErrors($validator);
|
2019-04-11 16:52:10 +00:00
|
|
|
}
|
|
|
|
throw new GeneralException(trans('exceptions.backend.dataset.update_error'));
|
|
|
|
}
|
|
|
|
|
2020-01-23 16:52:26 +00:00
|
|
|
private function containsOnlyNull($input)
|
|
|
|
{
|
|
|
|
return empty(array_filter($input, function ($a) {
|
|
|
|
return $a !== null;
|
|
|
|
}));
|
|
|
|
}
|
|
|
|
|
|
|
|
public function download($id)
|
|
|
|
{
|
|
|
|
//$report = $this->report->find($id);
|
|
|
|
$file = File::findOrFail($id);
|
|
|
|
$file_path = public_path('storage/' . $file->path_name);
|
|
|
|
$ext = \Illuminate\Support\Facades\File::extension($file_path);
|
|
|
|
return response()->download($file_path, $file->label . "." . $ext, ['Content-Type:' . $file->mime_type]);
|
|
|
|
// return response()->download($file_path, $file->label, ['Content-Type:' . $file->mime_type]);
|
|
|
|
}
|
|
|
|
|
2019-04-11 16:52:10 +00:00
|
|
|
/**
|
|
|
|
* Display the specified resource.
|
|
|
|
*
|
|
|
|
* @param int $id
|
|
|
|
* @return \Illuminate\View\View
|
|
|
|
*/
|
2019-12-20 10:44:40 +00:00
|
|
|
public function approve($id): \Illuminate\Contracts\View\View
|
2019-04-11 16:52:10 +00:00
|
|
|
{
|
|
|
|
$dataset = Dataset::with('user:id,login')->findOrFail($id);
|
2020-02-25 12:09:49 +00:00
|
|
|
|
2019-04-11 16:52:10 +00:00
|
|
|
$reviewers = User::whereHas('roles', function ($q) {
|
|
|
|
$q->where('name', 'reviewer');
|
|
|
|
})->pluck('login', 'id');
|
|
|
|
|
2019-12-20 10:44:40 +00:00
|
|
|
return View::make('workflow.editor.approve', [
|
2019-04-11 16:52:10 +00:00
|
|
|
'dataset' => $dataset,
|
|
|
|
'reviewers' => $reviewers,
|
|
|
|
]);
|
|
|
|
}
|
2019-04-17 14:01:38 +00:00
|
|
|
|
2019-04-11 16:52:10 +00:00
|
|
|
public function approveUpdate(Request $request, $id)
|
|
|
|
{
|
|
|
|
// $dataset = Dataset::findOrFail($id);
|
|
|
|
// try {
|
|
|
|
// $dataset->setServerState("approved");
|
|
|
|
// $user = Auth::user();
|
|
|
|
// $dataset->reviewer()->associate($user)->save();
|
|
|
|
// $dataset->save();
|
|
|
|
// // return redirect()->back();
|
|
|
|
// return redirect()->route('publish.workflow.editor.index');
|
|
|
|
// } catch (Exception $e) {
|
|
|
|
// throw new GeneralException(trans('exceptions.publish.approve.update_error'));
|
|
|
|
// }
|
|
|
|
$dataset = Dataset::findOrFail($id);
|
|
|
|
$input = $request->all();
|
|
|
|
$input['server_state'] = 'approved';
|
2019-05-22 12:02:16 +00:00
|
|
|
if ($dataset->reject_reviewer_note != null) {
|
2019-05-29 12:04:46 +00:00
|
|
|
$input['reject_reviewer_note'] = null;
|
2019-05-22 12:02:16 +00:00
|
|
|
}
|
2019-04-11 16:52:10 +00:00
|
|
|
|
|
|
|
if ($dataset->update($input)) {
|
|
|
|
// event(new PageUpdated($page));
|
|
|
|
return redirect()
|
|
|
|
->route('publish.workflow.editor.index')
|
|
|
|
->with('flash_message', 'You have approved one dataset!');
|
|
|
|
}
|
|
|
|
throw new GeneralException(trans('exceptions.publish.approve.update_error'));
|
|
|
|
}
|
2019-05-21 16:28:18 +00:00
|
|
|
|
2020-02-25 12:09:49 +00:00
|
|
|
/**
|
2019-05-21 16:28:18 +00:00
|
|
|
* Reject dataset back to editor
|
|
|
|
*
|
|
|
|
* @param int $id
|
|
|
|
* @return \Illuminate\View\View
|
|
|
|
*/
|
2019-12-20 10:44:40 +00:00
|
|
|
public function reject($id): \Illuminate\Contracts\View\View
|
2019-05-21 16:28:18 +00:00
|
|
|
{
|
|
|
|
$dataset = Dataset::with('user:id,login')->findOrFail($id);
|
2019-12-20 10:44:40 +00:00
|
|
|
return View::make('workflow.editor.reject', [
|
2019-05-21 16:28:18 +00:00
|
|
|
'dataset' => $dataset,
|
|
|
|
]);
|
|
|
|
}
|
|
|
|
|
|
|
|
public function rejectUpdate(Request $request, $id)
|
|
|
|
{
|
2019-12-20 10:44:40 +00:00
|
|
|
$this->validate($request, [
|
2019-11-25 13:41:25 +00:00
|
|
|
'reject_editor_note' => 'required|min:10|max:500',
|
2020-02-25 12:09:49 +00:00
|
|
|
'server_state' => 'required',
|
2019-05-21 16:28:18 +00:00
|
|
|
]);
|
|
|
|
$dataset = Dataset::findOrFail($id);
|
|
|
|
$input = $request->all();
|
|
|
|
//$input['server_state'] = 'rejected_editor';
|
|
|
|
|
|
|
|
if ($dataset->update($input)) {
|
|
|
|
// event(new PageUpdated($page));
|
|
|
|
return redirect()
|
|
|
|
->route('publish.workflow.editor.index')
|
|
|
|
->with('flash_message', 'You have successfully rejected one dataset! The submitter will be informed.');
|
|
|
|
}
|
|
|
|
throw new GeneralException(trans('exceptions.publish.review.update_error'));
|
|
|
|
}
|
2019-05-28 17:02:21 +00:00
|
|
|
|
|
|
|
/**
|
|
|
|
* Display the specified dataset for publishing.
|
|
|
|
*
|
|
|
|
* @param int $id
|
|
|
|
* @return \Illuminate\View\View
|
|
|
|
*/
|
2019-12-20 10:44:40 +00:00
|
|
|
public function publish($id): \Illuminate\Contracts\View\View
|
2019-05-28 17:02:21 +00:00
|
|
|
{
|
|
|
|
$dataset = Dataset::query()
|
2020-02-25 12:09:49 +00:00
|
|
|
->with([
|
|
|
|
'titles',
|
|
|
|
'persons' => function ($query) {
|
|
|
|
$query->wherePivot('role', 'author');
|
|
|
|
},
|
|
|
|
])->findOrFail($id);
|
2019-05-28 17:02:21 +00:00
|
|
|
|
2019-12-20 10:44:40 +00:00
|
|
|
return View::make('workflow.editor.publish', [
|
2019-05-28 17:02:21 +00:00
|
|
|
'dataset' => $dataset,
|
|
|
|
]);
|
|
|
|
}
|
|
|
|
|
|
|
|
public function publishUpdate(Request $request, $id)
|
|
|
|
{
|
|
|
|
$dataset = Dataset::findOrFail($id);
|
2019-09-17 10:55:01 +00:00
|
|
|
|
|
|
|
$max = Dataset::max('publish_id');
|
|
|
|
$publish_id = 0;
|
|
|
|
if ($max != null) {
|
2020-02-25 12:09:49 +00:00
|
|
|
$publish_id = $max + 1;
|
2019-09-17 10:55:01 +00:00
|
|
|
} else {
|
|
|
|
$publish_id = $publish_id + 1;
|
|
|
|
}
|
|
|
|
|
2019-05-28 17:02:21 +00:00
|
|
|
$input = $request->all();
|
|
|
|
$input['server_state'] = 'published';
|
2019-09-12 15:40:21 +00:00
|
|
|
$input['server_date_published'] = Carbon::now()->toDateTimeString(); // Produces something like "2019-03-11 12:25:00"
|
2019-09-17 10:55:01 +00:00
|
|
|
$input['publish_id'] = $publish_id;
|
2019-05-28 17:02:21 +00:00
|
|
|
|
|
|
|
if ($dataset->update($input)) {
|
|
|
|
// event(new PageUpdated($page));
|
|
|
|
return redirect()
|
2019-09-12 15:40:21 +00:00
|
|
|
->route('publish.workflow.editor.index')
|
2019-05-28 17:02:21 +00:00
|
|
|
->with('flash_message', 'You have successfully published the dataset!');
|
|
|
|
}
|
|
|
|
throw new GeneralException(trans('exceptions.publish.publish.update_error'));
|
|
|
|
}
|
2021-05-18 11:17:29 +00:00
|
|
|
|
|
|
|
/**
|
|
|
|
* Display the specified dataset for publishing.
|
|
|
|
*
|
|
|
|
* @param int $id
|
|
|
|
* @return \Illuminate\View\View
|
|
|
|
*/
|
2021-05-19 13:10:46 +00:00
|
|
|
public function doiCreate($id): \Illuminate\Contracts\View\View
|
2021-05-18 11:17:29 +00:00
|
|
|
{
|
|
|
|
$dataset = Dataset::query()
|
|
|
|
->with([
|
|
|
|
'titles',
|
|
|
|
'persons' => function ($query) {
|
|
|
|
$query->wherePivot('role', 'author');
|
|
|
|
},
|
|
|
|
])->findOrFail($id);
|
|
|
|
|
|
|
|
return View::make('workflow.editor.doi', [
|
|
|
|
'dataset' => $dataset,
|
|
|
|
]);
|
|
|
|
}
|
|
|
|
/**
|
|
|
|
* Store a newly created resource in storage.
|
|
|
|
*
|
|
|
|
* @param \Illuminate\Http\Request $request
|
|
|
|
* @return \Illuminate\Http\Response
|
|
|
|
*/
|
|
|
|
public function doiStore(Request $request, $publish_id)
|
|
|
|
{
|
|
|
|
$dataId = $publish_id; //$request->input('publish_id');
|
|
|
|
// Setup stylesheet
|
|
|
|
$this->loadStyleSheet(public_path() . '/prefixes/doi_datacite.xslt');
|
|
|
|
|
|
|
|
// set timestamp
|
|
|
|
$date = new \DateTime();
|
|
|
|
$unixTimestamp = $date->getTimestamp();
|
|
|
|
$this->proc->setParameter('', 'unixTimestamp', $unixTimestamp);
|
|
|
|
|
|
|
|
$prefix = "";
|
|
|
|
$base_domain = "";
|
|
|
|
$datacite_environment = config('tethys.datacite_environment');
|
|
|
|
if ($datacite_environment == "debug") {
|
|
|
|
$prefix = config('tethys.datacite_test_prefix');
|
2021-05-25 12:15:02 +00:00
|
|
|
$base_domain = config('tethys.test_base_domain');
|
|
|
|
} elseif ($datacite_environment == "production") {
|
2021-05-18 11:17:29 +00:00
|
|
|
$prefix = config('tethys.datacite_prefix');
|
|
|
|
$base_domain = config('tethys.base_domain');
|
|
|
|
}
|
|
|
|
// $prefix = config('tethys.datacite_prefix');
|
|
|
|
$this->proc->setParameter('', 'prefix', $prefix);
|
|
|
|
|
|
|
|
$repIdentifier = "tethys";
|
|
|
|
$this->proc->setParameter('', 'repIdentifier', $repIdentifier);
|
|
|
|
|
|
|
|
$this->xml->appendChild($this->xml->createElement('Datasets'));
|
|
|
|
$dataset = Dataset::where('publish_id', '=', $dataId)->firstOrFail();
|
|
|
|
if (is_null($dataset)) {
|
|
|
|
throw new OaiModelException('Dataset is not available for registering DOI!', OaiModelError::NORECORDSMATCH);
|
|
|
|
}
|
|
|
|
$dataset->fetchValues();
|
|
|
|
$xmlModel = new \App\Library\Xml\XmlModel();
|
|
|
|
$xmlModel->setModel($dataset);
|
|
|
|
$xmlModel->excludeEmptyFields();
|
|
|
|
$cache = ($dataset->xmlCache) ? $dataset->xmlCache : new \App\Models\XmlCache();
|
|
|
|
$xmlModel->setXmlCache($cache);
|
|
|
|
$domNode = $xmlModel->getDomDocument()->getElementsByTagName('Rdr_Dataset')->item(0);
|
|
|
|
$node = $this->xml->importNode($domNode, true);
|
|
|
|
$this->addSpecInformation($node, 'data-type:' . $dataset->type);
|
|
|
|
|
|
|
|
$this->xml->documentElement->appendChild($node);
|
|
|
|
$xmlMeta = $this->proc->transformToXML($this->xml);
|
|
|
|
// Log::alert($xmlMeta);
|
|
|
|
//create doiValue and correspunfing landingpage of tehtys
|
|
|
|
$doiValue = $prefix . '/tethys.' . $dataset->publish_id;
|
|
|
|
// $appUrl = config('app.url');
|
|
|
|
$landingPageUrl = $base_domain . "/dataset/" . $dataset->publish_id;
|
|
|
|
$response = $this->doiClient->registerDoi($doiValue, $xmlMeta, $landingPageUrl);
|
|
|
|
// if operation successful, store dataste identifier
|
|
|
|
if ($response->getStatusCode() == 201) {
|
|
|
|
$doi = new DatasetIdentifier();
|
|
|
|
$doi['value'] = $doiValue; //$landingPageUrl;
|
|
|
|
$doi['dataset_id'] = $dataset->id;
|
|
|
|
$doi['type'] = "doi";
|
|
|
|
$doi['status'] = "findable";
|
|
|
|
if ($doi->save()) {
|
|
|
|
// update server_date_modified for triggering nex xml cache (doi interface)
|
2021-05-19 13:10:46 +00:00
|
|
|
// $time = new \Illuminate\Support\Carbon();
|
|
|
|
// $dataset->server_date_modified = $time;
|
|
|
|
// $dataset->save();
|
|
|
|
// dataset gets automatically updated because of touches array
|
2021-05-18 11:17:29 +00:00
|
|
|
return redirect()
|
|
|
|
->route('publish.workflow.editor.index')
|
|
|
|
->with('flash_message', 'You have successfully created a DOI for the dataset!');
|
|
|
|
}
|
|
|
|
} else {
|
|
|
|
$message = 'unexpected DataCite MDS response code ' . $response->getStatusCode();
|
|
|
|
// $this->log($message, 'err');
|
|
|
|
throw new GeneralException($message);
|
|
|
|
}
|
|
|
|
}
|
|
|
|
|
|
|
|
/**
|
|
|
|
* Load an xslt stylesheet.
|
|
|
|
*
|
|
|
|
* @return void
|
|
|
|
*/
|
|
|
|
private function loadStyleSheet($stylesheet)
|
|
|
|
{
|
|
|
|
$this->xslt = new \DomDocument;
|
|
|
|
$this->xslt->load($stylesheet);
|
|
|
|
$this->proc->importStyleSheet($this->xslt);
|
|
|
|
if (isset($_SERVER['HTTP_HOST'])) {
|
|
|
|
$this->proc->setParameter('', 'host', $_SERVER['HTTP_HOST']);
|
|
|
|
}
|
|
|
|
//$this->proc->setParameter('', 'server', $this->getRequest()->getBaseUrl());
|
|
|
|
}
|
|
|
|
|
|
|
|
private function addSpecInformation(\DOMNode $document, $information)
|
|
|
|
{
|
|
|
|
$setSpecAttribute = $this->xml->createAttribute('Value');
|
|
|
|
$setSpecAttributeValue = $this->xml->createTextNode($information);
|
|
|
|
$setSpecAttribute->appendChild($setSpecAttributeValue);
|
|
|
|
|
|
|
|
$setSpecElement = $this->xml->createElement('SetSpec');
|
|
|
|
//$setSpecElement =new \DOMElement("SetSpec");
|
|
|
|
$setSpecElement->appendChild($setSpecAttribute);
|
|
|
|
$document->appendChild($setSpecElement);
|
|
|
|
}
|
2019-04-11 16:52:10 +00:00
|
|
|
}
|