tethys/app/Http/Controllers/Oai/RequestController.php

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<?php
namespace App\Http\Controllers\Oai;
use App\Exceptions\OaiModelException;
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use App\Http\Controllers\Controller;
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use App\Models\Dataset;
use App\Models\Project;
use App\Models\Oai\Configuration as OaiModelConfiguration;
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use App\Models\Oai\OaiModelError;
use App\Models\Oai\ResumptionTokens;
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use App\Models\Oai\ResumptionToken;
use Illuminate\Database\Eloquent\ModelNotFoundException;
use Illuminate\Http\Request;
use Illuminate\Support\Facades\Log;
use \Exception;
use Carbon\Carbon;
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class RequestController extends Controller
{
/**
* Holds information about which dataset state aka server_state
* are delivered out
*
* @var array
*/
private $deliveringDocumentStates = array('published', 'deleted'); // maybe deleted documents too
//private $xMetaDissRestriction = array('doctoralthesis', 'habilitation');
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const SET_SPEC_PATTERN = '[A-Za-z0-9\-_\.!~\*\'\(\)]+';
/**
* Holds xml representation of document information to be processed.
*
* @var \DomDocument Defaults to null.
*/
protected $xml = null;
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/**
* Holds the stylesheet for the transformation.
*
* @var \DomDocument Defaults to null.
*/
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protected $xslt = null;
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/**
* Holds the xslt processor.
*
* @var \XSLTProcessor Defaults to null.
*/
protected $proc = null;
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/**
* Load an xslt stylesheet.
*
* @return void
*/
private function loadStyleSheet($stylesheet)
{
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$this->xslt = new \DomDocument;
$this->xslt->load($stylesheet);
$this->proc->importStyleSheet($this->xslt);
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if (isset($_SERVER['HTTP_HOST'])) {
$this->proc->setParameter('', 'host', $_SERVER['HTTP_HOST']);
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}
//$this->proc->setParameter('', 'server', $this->getRequest()->getBaseUrl());
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}
public function __construct()
{
//$this->middleware('auth');
// Initialize member variables.
$this->xml = new \DomDocument();
$this->proc = new \XSLTProcessor();
$this->configuration = new OaiModelConfiguration();
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}
public function index(Request $request)
{
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// to handle POST and GET Request, take any given parameter
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$oaiRequest = $request->all();
if ($oaiRequest == null) {
return view('oai.index');
}
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$safeRemoveParameters = array('module', 'controller', 'action', 'role');
foreach ($safeRemoveParameters as $parameter) {
unset($oaiRequest[$parameter]);
}
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try {
$this->__handleRequest($oaiRequest);
} catch (OaiModelException $e) {
$errorCode = OaiModelError::mapCode($e->getCode());
//$this->getLogger()->err($errorCode);
$this->proc->setParameter('', 'oai_error_code', $errorCode);
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//$this->getLogger()->err($e->getMessage());
$this->proc->setParameter('', 'oai_error_message', htmlentities($e->getMessage()));
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} catch (Exception $e) {
//$this->getLogger()->err($e);
$this->proc->setParameter('', 'oai_error_code', 'unknown');
$this->proc->setParameter('', 'oai_error_message', 'An internal error occured.');
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//$this->getResponse()->setHttpResponseCode(500);
}
// $xml = $this->xml->saveXML();
$xml = $this->proc->transformToXML($this->xml);
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//$xml = $this->doc->asXML();
return response($xml) //->view('rss', array('rss'=>$this->rss))
->header('Content-Type', 'application/xml')
->header('charset', 'utf-8');
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}
private function __handleRequest(array $oaiRequest)
{
// Setup stylesheet
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$this->loadStyleSheet('datasetxml2oai-pmh.xslt');
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// Set response time
$this->proc->setParameter('', 'responseDate', date("Y-m-d\TH:i:s\Z"));
// set timestamp
$date = new \DateTime();
$unixTimestamp = $date->getTimestamp();
$this->proc->setParameter('', 'unixTimestamp', $unixTimestamp);
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// set OAI base url
$uri = explode('?', $_SERVER['REQUEST_URI'], 2);
$this->proc->setParameter('', 'baseURL', url('/') . $uri[0]);
$this->proc->setParameter('', 'repURL', url('/'));
$this->proc->setParameter('', 'downloadLink', url('/') . '/file/download/');
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// $resumptionPath = $this->configuration->getResumptionTokenPath();
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if (isset($oaiRequest['verb'])) {
$this->proc->setParameter('', 'oai_verb', $oaiRequest['verb']);
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if ($oaiRequest['verb'] == 'Identify') {
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$this->handleIdentify();
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} elseif ($oaiRequest['verb'] == 'ListMetadataFormats') {
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$this->handleListMetadataFormats();
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} elseif ($oaiRequest['verb'] == 'ListRecords') {
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$this->handleListRecords($oaiRequest);
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} elseif ($oaiRequest['verb'] == 'GetRecord') {
$this->handleGetRecord($oaiRequest);
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} elseif ($oaiRequest['verb'] == 'ListIdentifiers') {
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$this->handleListIdentifiers($oaiRequest);
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} elseif ($oaiRequest['verb'] == 'ListSets') {
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$this->handleListSets($oaiRequest);
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} else {
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$this->handleIllegalVerb();
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}
} else {
// $oaiRequest['verb'] = 'Identify';
// $this->proc->setParameter('', 'oai_verb', $oaiRequest['verb']);
// $this->doc = $this->handleIdentify();
throw new OaiModelException('The verb provided in the request is illegal.', OaiModelError::BADVERB);
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}
}
/**
* Implements response for OAI-PMH verb 'Identify'.
*
* @return void
*/
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private function handleIdentify()
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{
$email = "repository@geologie.ac.at";
$repositoryName = "Tethys RDR";
$repIdentifier = "tethys.at";
$sampleIdentifier = "oai:" . $repIdentifier . ":1"; //$this->_configuration->getSampleIdentifier();
$earliestDateFromDb = Dataset::earliestPublicationDate() != null ?
Dataset::earliestPublicationDate()->server_date_published->format('Y-m-d\TH:i:s\Z') : null;
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// set parameters for oai-pmh.xslt
$this->proc->setParameter('', 'email', $email);
$this->proc->setParameter('', 'repositoryName', $repositoryName);
$this->proc->setParameter('', 'repIdentifier', $repIdentifier);
$this->proc->setParameter('', 'sampleIdentifier', $sampleIdentifier);
$this->proc->setParameter('', 'earliestDatestamp', $earliestDateFromDb);
$this->xml->appendChild($this->xml->createElement('Datasets'));
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}
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/**
* Implements response for OAI-PMH verb 'GetRecord'.
*
* @param array &$oaiRequest Contains full request information
* @return void
*/
private function handleGetRecord(array &$oaiRequest)
{
$repIdentifier = "tethys.at";
$this->proc->setParameter('', 'repIdentifier', $repIdentifier);
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// Identifier references metadata Urn, not plain Id!
// Currently implemented as 'oai:foo.bar.de:{docId}' or 'urn:nbn...-123'
if (!array_key_exists('identifier', $oaiRequest)) {
throw new OaiModelException(
'The prefix of the identifier argument is unknown.',
OaiModelError::BADARGUMENT
);
}
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$dataId = $this->getDocumentIdByIdentifier($oaiRequest['identifier']);
$dataset = null;
try {
//$dataset = new Opus_Document($docId);
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//$dataset = Dataset::findOrFail($publishId);
$dataset = Dataset::where('publish_id', '=', $dataId)->firstOrFail();
} catch (ModelNotFoundException $ex) {
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throw new OaiModelException(
'The value of the identifier argument is unknown or illegal in this repository.',
OaiModelError::IDDOESNOTEXIST
);
}
$metadataPrefix = null;
if (true === array_key_exists('metadataPrefix', $oaiRequest)) {
$metadataPrefix = $oaiRequest['metadataPrefix'];
} else {
throw new OaiModelException(
'The prefix of the metadata argument is unknown.',
OaiModelError::BADARGUMENT
);
}
$this->proc->setParameter('', 'oai_metadataPrefix', $metadataPrefix);
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// do not deliver datasets which are restricted by document state
if (is_null($dataset)
//or (false === in_array($dataset->getServerState(), $this->_deliveringDocumentStates))
or (false === $dataset->whereIn('server_state', $this->deliveringDocumentStates))
//or (false === $dataset->hasEmbargoPassed())
) {
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throw new OaiModelException('Document is not available for OAI export!', OaiModelError::NORECORDSMATCH);
}
$this->xml->appendChild($this->xml->createElement('Datasets'));
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$this->createXmlRecord($dataset);
}
/**
* Retrieve a document id by an oai identifier.
*
* @param string $oaiIdentifier
* @result int
*/
private function getDocumentIdByIdentifier($oaiIdentifier)
{
$identifierParts = explode(":", $oaiIdentifier);
$dataId = null;
switch ($identifierParts[0]) {
case 'oai':
if (isset($identifierParts[2])) {
$dataId = $identifierParts[2];
}
break;
default:
throw new OaiModelException(
'The prefix of the identifier argument is unknown.',
OaiModelError::BADARGUMENT
);
break;
}
if (empty($dataId) or !preg_match('/^\d+$/', $dataId)) {
throw new OaiModelException(
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'The value of the identifier argument is unknown or illegal in this repository.',
OaiModelError::IDDOESNOTEXIST
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);
}
return $dataId;
}
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/**
* Implements response for OAI-PMH verb 'ListMetadataFormats'.
*
* @param array &$oaiRequest Contains full request information
* @return void
*/
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private function handleListMetadataFormats()
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{
$this->xml->appendChild($this->xml->createElement('Datasets'));
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}
/**
* Implements response for OAI-PMH verb 'ListRecords'.
*
* @param array &$oaiRequest Contains full request information
* @return void
*/
private function handleListRecords(array &$oaiRequest)
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{
//$maxRecords = 30; //$this->_configuration->getMaxListRecords();
$maxRecords = $this->configuration->getMaxListRecords();
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$this->handlingOfLists($oaiRequest, $maxRecords);
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}
/**
* Implements response for OAI-PMH verb 'ListIdentifiers'.
*
* @param array &$oaiRequest Contains full request information
* @return void
*/
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private function handleListIdentifiers(array &$oaiRequest)
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{
//$maxIdentifier = 5; //$this->_configuration->getMaxListIdentifiers();
$maxIdentifier = $this->configuration->getMaxListIdentifiers();
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$this->handlingOfLists($oaiRequest, $maxIdentifier);
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}
/**
* Implements response for OAI-PMH verb 'ListSets'.
*
* @param array &$oaiRequest Contains full request information
* @return void
*/
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private function handleListSets()
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{
$repIdentifier = "tethys.at";
$this->proc->setParameter('', 'repIdentifier', $repIdentifier);
$this->xml->appendChild($this->xml->createElement('Datasets'));
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//$oaiSets = new Oai_Model_Sets();
$sets = array(
// 'bibliography:true' => 'Set for bibliographic entries',
// 'bibliography:false' => 'Set for non-bibliographic entries',
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);
$sets = array_merge(
$sets,
$this->getSetsForDocumentTypes(),
$this->getSetsForProjects(),
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);
//$sets = $this->getSetsForDocumentTypes();
foreach ($sets as $type => $name) {
$opusDoc = $this->xml->createElement('Rdr_Sets');
$typeAttr = $this->xml->createAttribute('Type');
$typeValue = $this->xml->createTextNode($type);
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$typeAttr->appendChild($typeValue);
$opusDoc->appendChild($typeAttr);
$nameAttr = $this->xml->createAttribute('TypeName');
$nameValue = $this->xml->createTextNode($name);
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$nameAttr->appendChild($nameValue);
$opusDoc->appendChild($nameAttr);
$this->xml->documentElement->appendChild($opusDoc);
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}
}
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private function handleIllegalVerb()
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{
$this->proc->setParameter('', 'oai_error_code', 'badVerb');
$this->proc->setParameter('', 'oai_error_message', 'The verb provided in the request is illegal.');
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}
/**
* Helper method for handling lists.
*
* @param array $oaiRequest query parameter
* @param mixed $maxRecords max count of records
*
* @return void
*/
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private function handlingOfLists(array &$oaiRequest, $maxRecords)
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{
if (true === empty($maxRecords)) {
$maxRecords = 100;
}
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$repIdentifier = "tethys.at";
//$this->_configuration->getResumptionTokenPath();
$tokenTempPath = storage_path('app' . DIRECTORY_SEPARATOR . 'resumption');
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$this->proc->setParameter('', 'repIdentifier', $repIdentifier);
$this->xml->appendChild($this->xml->createElement('Datasets'));
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// do some initialisation
$cursor = 0;
//$totalIds = 0;
$start = $maxRecords + 1;
$reldocIds = array();
$metadataPrefix = null;
// if (true === array_key_exists('metadataPrefix', $oaiRequest)) {
// $metadataPrefix = $oaiRequest['metadataPrefix'];
// }
// $this->proc->setParameter('', 'oai_metadataPrefix', $metadataPrefix);
$tokenWorker = new ResumptionTokens();
$tokenWorker->setResumptionPath($tokenTempPath);
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// parameter resumptionToken is given
if (false === empty($oaiRequest['resumptionToken'])) {
$resParam = $oaiRequest['resumptionToken']; //e.g. "158886496600000"
$token = $tokenWorker->getResumptionToken($resParam);
if (true === is_null($token)) {
throw new OaiModelException("cache is outdated.", OaiModelError::BADRESUMPTIONTOKEN);
}
$cursor = $token->getStartPosition() - 1;//startet dann bei Index 10
$start = $token->getStartPosition() + $maxRecords;
$totalIds = $token->getTotalIds();
$reldocIds = $token->getDocumentIds();
$metadataPrefix = $token->getMetadataPrefix();
$this->proc->setParameter('', 'oai_metadataPrefix', $metadataPrefix);
// else no resumptionToken is given
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} else {
// no resumptionToken is given
if (true === array_key_exists('metadataPrefix', $oaiRequest)) {
$metadataPrefix = $oaiRequest['metadataPrefix'];
} else {
throw new OaiModelException(
'The prefix of the metadata argument is unknown.',
OaiModelError::BADARGUMENT
);
}
$this->proc->setParameter('', 'oai_metadataPrefix', $metadataPrefix);
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$finder = Dataset::query();
// add server state restrictions
$finder->whereIn('server_state', $this->deliveringDocumentStates);
if (array_key_exists('set', $oaiRequest)) {
$setarray = explode(':', $oaiRequest['set']);
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if ($setarray[0] == 'data-type') {
if (count($setarray) === 2 and !empty($setarray[1])) {
$finder->where('type', $setarray[1]);
}
} elseif ($setarray[0] == 'project') {
if (count($setarray) === 2 and !empty($setarray[1])) {
// $finder->where('type', $setarray[1]);
$finder->whereHas('project', function ($q) use ($setarray) {
$q->where('label', $setarray[1]);
});
}
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}
}
if (array_key_exists('from', $oaiRequest) && array_key_exists('until', $oaiRequest)) {
$from = $oaiRequest['from'];
$until = $oaiRequest['until'];
if (strlen($from) != strlen($until)) {
throw new OaiModelException(
'The request has different granularities for the from and until parameters.',
OaiModelError::BADARGUMENT
);
}
}
if (array_key_exists('until', $oaiRequest)) {
$until = $oaiRequest['until'];
try {
$untilDate = \Illuminate\Support\Carbon::parse($until);
// if (strtotime($untilDate) > 0) {
$earliestPublicationDate = Dataset::earliestPublicationDate()->server_date_published;
if ($earliestPublicationDate->gt($untilDate)) {
throw new OaiModelException(
"earliestDatestamp is greater than given until date. The given values results in an empty list.",
OaiModelError::NORECORDSMATCH
);
} else {
$finder->where('server_date_published', '<=', $untilDate);
$test = $finder->toSql();
}
} catch (OaiModelException $e) {
throw new OaiModelException(
"earliestDatestamp is greater than given until date. The given values results in an empty list.",
OaiModelError::NORECORDSMATCH
);
} catch (\Exception $e) {
throw new OaiModelException(
'The until date argument is not valid.',
OaiModelError::BADARGUMENT
);
}
}
if (array_key_exists('from', $oaiRequest)) {
$from = $oaiRequest['from'];
try {
$fromDate = \Illuminate\Support\Carbon::parse($from);
// if (strtotime($fromDate) > 0) {
$now = new Carbon();
if ($fromDate->gt($now)) {
throw new OaiModelException(
"Given from date is greater than now. The given values results in an empty list.",
OaiModelError::NORECORDSMATCH
);
} else {
$finder->where('server_date_published', '>=', $fromDate);
}
} catch (OaiModelException $e) {
throw new OaiModelException(
"Given from date is greater than now. The given values results in an empty list.",
OaiModelError::NORECORDSMATCH
);
} catch (\Exception $e) {
throw new OaiModelException(
'The from date argument is not valid.',
OaiModelError::BADARGUMENT
);
}
}
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$totalIds = $finder->count();
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$reldocIds = $finder->orderBy('publish_id')->pluck('publish_id')->toArray();
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}
// handling of document ids
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$restIds = $reldocIds;
$workIds = array_splice($restIds, 0, $maxRecords);
//foreach ($datasets as $dataset)
foreach ($workIds as $dataId) {
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//$dataset = Dataset::findOrFail($dataId);
$dataset = Dataset::where('publish_id', '=', $dataId)->firstOrFail();
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$this->createXmlRecord($dataset);
}
// no records returned
if (true === empty($workIds)) {
throw new OaiModelException(
"The combination of the given values results in an empty list.",
OaiModelError::NORECORDSMATCH
);
}
// store the further Ids in a resumption-file
$countRestIds = count($restIds);
if ($countRestIds > 0) {
$token = new ResumptionToken();
$token->setStartPosition($start);
$token->setTotalIds($totalIds);
$token->setDocumentIds($restIds);
$token->setMetadataPrefix($metadataPrefix);
$tokenWorker->storeResumptionToken($token);
// set parameters for the resumptionToken-node
$res = $token->getResumptionId();
$this->setParamResumption($res, $cursor, $totalIds);
}
}
/**
* Set parameters for resumptionToken-line.
*
* @param string $res value of the resumptionToken
* @param int $cursor value of the cursor
* @param int $totalIds value of the total Ids
*/
private function setParamResumption($res, $cursor, $totalIds)
{
$tomorrow = str_replace('+00:00', 'Z', Carbon::now()->addHour(1)->setTimeZone('UTC'));
$this->proc->setParameter('', 'dateDelete', $tomorrow);
$this->proc->setParameter('', 'res', $res);
$this->proc->setParameter('', 'cursor', $cursor);
$this->proc->setParameter('', 'totalIds', $totalIds);
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}
private function createXmlRecord(Dataset $dataset)
{
//$node = $this->xml->createElement('Rdr_Dataset');
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$domNode = $this->getDatasetXmlDomNode($dataset);
// add frontdoor url
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$this->addLandingPageAttribute($domNode, $dataset->publish_id);
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// add access rights to element
//$this->_addAccessRights($domNode, $dataset);
$node = $this->xml->importNode($domNode, true);
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//$node->setAttribute("Id", $dataset->id);
//$node->setAttribute("ServerState", $dataset->server_state);
////$child = new \DOMElement("ServerDateModified");
//$child = $this->xml->createElement('ServerDateModified');
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//$child->setAttribute("Year", $dataset->server_date_modified->format('Y'));
//$child->setAttribute("Month", $dataset->server_date_modified->month);
//$child->setAttribute("Day", $dataset->server_date_modified->day);
//$node->appendChild($child);
//$type = $dataset->type;
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$this->addSpecInformation($node, 'data-type:' . $dataset->type);
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//$this->addSpecInformation($node, 'bibliography:' . 'false');
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$this->xml->documentElement->appendChild($node);
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}
/**
* Add the landingpage attribute to Rdr_Dataset XML output.
*
* @param \DOMNode $document Rdr_Dataset XML serialisation
* @param string $docid Id of the dataset
* @return void
*/
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private function addLandingPageAttribute(\DOMNode $document, $dataid)
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{
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$url = route('frontend.dataset.show', $dataid);
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$owner = $document->ownerDocument;
$attr = $owner->createAttribute('landingpage');
$attr->appendChild($owner->createTextNode($url));
$document->appendChild($attr);
}
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private function addSpecInformation(\DOMNode $document, $information)
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{
$setSpecAttribute = $this->xml->createAttribute('Value');
$setSpecAttributeValue = $this->xml->createTextNode($information);
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$setSpecAttribute->appendChild($setSpecAttributeValue);
$setSpecElement = $this->xml->createElement('SetSpec');
//$setSpecElement =new \DOMElement("SetSpec");
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$setSpecElement->appendChild($setSpecAttribute);
$document->appendChild($setSpecElement);
}
private function getDatasetXmlDomNode($dataset)
{
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if (!in_array($dataset->server_state, $this->deliveringDocumentStates)) {
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$message = 'Trying to get a document in server state "' . $dataset->server_state . '"';
//Zend_Registry::get('Zend_Log')->err($message);
Log::error("server state: $message");
throw new \Exception($message);
}
$dataset->fetchValues();
$xmlModel = new \App\Library\Xml\XmlModel();
$xmlModel->setModel($dataset);
$xmlModel->excludeEmptyFields();
$cache = ($dataset->xmlCache) ? $dataset->xmlCache : new \App\Models\XmlCache();
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$xmlModel->setXmlCache($cache);
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return $xmlModel->getDomDocument()->getElementsByTagName('Rdr_Dataset')->item(0);
}
/**
* Returns oai sets for projects.
* @return array
*/
private function getSetsForProjects()
{
$setSpecPattern = self::SET_SPEC_PATTERN;
$sets = array();
$projects = Project::pluck('name', 'label')->toArray();
foreach ($projects as $doctype => $row) {
if (0 == preg_match("/^$setSpecPattern$/", $doctype)) {
$msg = "Invalid SetSpec (doctype='" . $doctype . "')."
. " Allowed characters are [$setSpecPattern].";
Log::error("OAI-PMH: $msg");
continue;
}
$setSpec = 'project:' . $doctype;
// $count = $row['count'];
$sets[$setSpec] = "Set for project '$doctype'";
}
return $sets;
}
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/**
* Returns oai sets for document types.
* @return array
*/
private function getSetsForDocumentTypes()
{
$setSpecPattern = self::SET_SPEC_PATTERN;
$sets = array();
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$finder = new \App\Models\DatasetFinder();
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$finder->setServerState('published');
foreach ($finder->groupedTypesPlusCount() as $doctype => $row) {
if (0 == preg_match("/^$setSpecPattern$/", $doctype)) {
$msg = "Invalid SetSpec (doctype='" . $doctype . "')."
. " Allowed characters are [$setSpecPattern].";
Log::error("OAI-PMH: $msg");
continue;
}
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$setSpec = 'data-type:' . $doctype;
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// $count = $row['count'];
$sets[$setSpec] = "Set for document type '$doctype'";
}
return $sets;
}
private function handleIdentifyOld()
{
//$earliestDateFromDb = Opus_Document::getEarliestPublicationDate();
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// $earliestDateFromDb = Dataset::select('server_date_created')
// ->orderBy('server_date_created', 'desc')
// ->first()->toDateTimeString();
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$earliestDateFromDb = Dataset::earliestPublicationDate();
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$sxe = new \SimpleXMLElement(
'<?xml version="1.0"?><?xml-stylesheet type="text/xsl" href="xsl/oai2.xslt"?><OAI-PMH/>'
);
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$sxe->addAttribute('xmlns', 'http://www.openarchives.org/OAI/2.0/');
$sxe->addAttribute('xmlns:xsi', 'http://www.w3.org/2001/XMLSchema-instance');
$sxe->addAttribute('xmlns:mml', 'http://www.w3.org/1998/Math/MathML');
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$sxe->addAttribute(
'xsi:schemaLocation',
'http://www.openarchives.org/OAI/2.0/ http://www.openarchives.org/OAI/2.0/OAI-PMH.xsd'
);
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$sxe->addChild('responseDate', date("Y-m-d\TH:i:s\Z"));
$uri = explode('?', $_SERVER['REQUEST_URI'], 2);
$requestChild = $sxe->addChild('request', url('/') . $uri[0]);
$requestChild->addAttribute('verb', 'Identify');
$identify = $sxe->addChild('Identify');
$identify->addChild('repositoryName', "Data Research Repository");
$identify->addChild('baseURL', "https://tethys.at/");
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$identify->addChild('protocolVersion', '2.0');
$identify->addChild('adminEmail', 'repository@geologie.ac.at');
//$identify->addChild('earliestDatestamp', '2017-04-07');
$identify->addChild('earliestDatestamp', $earliestDateFromDb);
$identify->addChild('deletedRecord', 'persistent');
//$description = $identify->addChild('description');
//$oaiIdentifier = $description->addChild('oai-identifier');
//$oaiIdentifier->addAttribute('xmlns', 'http://www.openarchives.org/OAI/2.0/oai-identifier');
//$oaiIdentifier->addAttribute('xsi:schemaLocation', 'http://www.openarchives.org/OAI/2.0/oai-identifier');
//$oaiIdentifier->addChild('scheme', 'oai');
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return $sxe;
}
}