From 5f8fe1c16da674fee82706c929796c2e2532f7ef Mon Sep 17 00:00:00 2001 From: Arno Kaimbacher Date: Wed, 23 Aug 2023 17:07:26 +0200 Subject: [PATCH] - add references, collections and identifiers to dataset model - npm updates --- .../Http/Submitter/DatasetController.ts | 34 +- app/Models/Collection.ts | 45 ++ app/Models/Dataset.ts | 19 + app/Models/DatasetIdentifier.ts | 40 ++ app/Validators/CreateDatasetValidator.ts | 17 +- database/migrations/files_1_document_files.ts | 2 +- package-lock.json | 607 +++++++++--------- package.json | 2 +- .../js/Pages/Submitter/Dataset/Create.vue | 39 +- 9 files changed, 459 insertions(+), 346 deletions(-) create mode 100644 app/Models/Collection.ts create mode 100644 app/Models/DatasetIdentifier.ts diff --git a/app/Controllers/Http/Submitter/DatasetController.ts b/app/Controllers/Http/Submitter/DatasetController.ts index c990e15..1f17f97 100644 --- a/app/Controllers/Http/Submitter/DatasetController.ts +++ b/app/Controllers/Http/Submitter/DatasetController.ts @@ -7,6 +7,7 @@ import Title from 'App/Models/Title'; import Description from 'App/Models/Description'; import Language from 'App/Models/Language'; import Coverage from 'App/Models/Coverage'; +import Collection from 'App/Models/Collection'; // import CreateUserValidator from 'App/Validators/CreateUserValidator'; // import UpdateUserValidator from 'App/Validators/UpdateUserValidator'; import { schema, CustomMessages, rules } from '@ioc:Adonis/Core/Validator'; @@ -48,6 +49,14 @@ export default class DatasetController { datasets.orderBy('id', 'asc'); } + // const results = await Database + // .query() + // .select(Database.raw("CONCAT('https://doi.org/', b.value) AS concatenated_value")) + // .from('documents as doc') + // .innerJoin('dataset_identifiers as b', 'doc.id', 'b.dataset_id') + // .groupBy('a.id').toQuery(); + + // const users = await User.query().orderBy('login').paginate(page, limit); const myDatasets = await datasets .whereIn('server_state', [ @@ -117,10 +126,8 @@ export default class DatasetController { .map(([key, value]) => ({ value: key, label: value })), // descriptiontypes: DescriptionTypes projects: projects, - referenceIdentifierTypes: Object.entries(ReferenceIdentifierTypes) - .map(([key, value]) => ({ value: key, label: value })), - relationTypes: Object.entries(RelationTypes) - .map(([key, value]) => ({ value: key, label: value })), + referenceIdentifierTypes: Object.entries(ReferenceIdentifierTypes).map(([key, value]) => ({ value: key, label: value })), + relationTypes: Object.entries(RelationTypes).map(([key, value]) => ({ value: key, label: value })), }); } @@ -245,15 +252,12 @@ export default class DatasetController { depth_min: schema.number.optional([rules.requiredIfExists('depth_max')]), depth_max: schema.number.optional([rules.requiredIfExists('depth_min')]), }), - references: schema.array([rules.uniqueArray('value')]).members( + references: schema.array.optional([rules.uniqueArray('value')]).members( schema.object().members({ - value: schema.string({ trim: true }, [ - rules.minLength(3), - rules.maxLength(255), - ]), + value: schema.string({ trim: true }, [rules.minLength(3), rules.maxLength(255)]), type: schema.enum(Object.values(ReferenceIdentifierTypes)), relation: schema.enum(Object.values(RelationTypes)), - // language: schema.string({ trim: true }, [rules.minLength(2), rules.maxLength(255)]), + label: schema.string({ trim: true }, [rules.minLength(2), rules.maxLength(255)]), }), ), subjects: schema.array([rules.minLength(3), rules.uniqueArray('value')]).members( @@ -404,6 +408,10 @@ export default class DatasetController { } } + // save collection + const collection: Collection | null = await Collection.query().where('id', 21).first(); + collection && (await dataset.useTransaction(trx).related('collections').attach([collection.id])); + // save coverage const coverageData = request.input('coverage'); if (coverageData) { @@ -481,6 +489,12 @@ export default class DatasetController { 'subjects.*.type.required': 'keyword type is required', 'subjects.*.language.required': 'language of keyword is required', + 'references.*.value.required': 'Additional reference value is required, if defined', + 'references.*.type.required': 'Additional reference identifier type is required', + 'references.*.relation.required': 'Additional reference relation type is required', + 'references.*.label.required': 'Additional reference label is required', + + 'files.minLength': 'At least {{ options.minLength }} file upload is required.', 'files.*.size': 'file size is to big', 'files.extnames': 'file extension is not supported', }; diff --git a/app/Models/Collection.ts b/app/Models/Collection.ts new file mode 100644 index 0000000..a9b871f --- /dev/null +++ b/app/Models/Collection.ts @@ -0,0 +1,45 @@ +import { column, BaseModel, SnakeCaseNamingStrategy, manyToMany, ManyToMany } from '@ioc:Adonis/Lucid/Orm'; +import Dataset from './Dataset'; + +export default class Collection extends BaseModel { + public static namingStrategy = new SnakeCaseNamingStrategy(); + public static primaryKey = 'id'; + public static table = 'collections'; + public static fillable: string[] = ['name', 'number', 'role_id']; + + @column({ + isPrimary: true, + }) + public id: number; + + @column({}) + public document_id: number; + + @column({}) + public role_id?: number; + + @column({}) + public number?: string; + + @column({}) + public name: string; + + @column({}) + public oai_subset?: string; + + @column({}) + public parent_id?: number; + + @column({}) + public visible: boolean; + + @column({}) + public visible_publish: boolean; + + @manyToMany(() => Dataset, { + pivotForeignKey: 'collection_id', + pivotRelatedForeignKey: 'document_id', + pivotTable: 'link_documents_collections', + }) + public datasets: ManyToMany; +} diff --git a/app/Models/Dataset.ts b/app/Models/Dataset.ts index 0b96463..7ea3119 100644 --- a/app/Models/Dataset.ts +++ b/app/Models/Dataset.ts @@ -23,6 +23,8 @@ import Subject from './Subject'; import File from './File'; import Coverage from './Coverage'; import DatasetReference from './DatasetReference'; +import Collection from './Collection'; +import DatasetIdentifier from './DatasetIdentifier'; export default class Dataset extends BaseModel { public static namingStrategy = new SnakeCaseNamingStrategy(); @@ -144,6 +146,23 @@ export default class Dataset extends BaseModel { }) public references: HasMany; + // public function collections() + // { + // return $this + // ->belongsToMany(Collection::class, 'link_documents_collections', 'document_id', 'collection_id'); + // } + @manyToMany(() => Collection, { + pivotForeignKey: 'document_id', + pivotRelatedForeignKey: 'collection_id', + pivotTable: 'link_documents_collections', + }) + public collections: ManyToMany; + + @hasOne(() => DatasetIdentifier, { + foreignKey: 'document_id', + }) + public identifier: HasOne; + @computed({ serializeAs: 'main_title', diff --git a/app/Models/DatasetIdentifier.ts b/app/Models/DatasetIdentifier.ts new file mode 100644 index 0000000..796704c --- /dev/null +++ b/app/Models/DatasetIdentifier.ts @@ -0,0 +1,40 @@ +import { column, BaseModel, SnakeCaseNamingStrategy, belongsTo, BelongsTo } from '@ioc:Adonis/Lucid/Orm'; +import { DateTime } from 'luxon'; +import Dataset from './Dataset'; + +export default class DatasetIdentifier extends BaseModel { + public static namingStrategy = new SnakeCaseNamingStrategy(); + public static primaryKey = 'id'; + public static table = 'dataset_identifiers'; + public static fillable: string[] = ['value', 'label', 'type', 'relation']; + + @column({ + isPrimary: true, + }) + public id: number; + + @column({}) + public document_id: number; + + @column({}) + public type: string; + + @column({}) + public value: string; + + @column.dateTime({ + autoCreate: true, + }) + public created_at?: DateTime; + + @column.dateTime({ + autoCreate: true, + autoUpdate: true, + }) + public updated_at?: DateTime; + + @belongsTo(() => Dataset, { + foreignKey: 'document_id', + }) + public dataset: BelongsTo; +} diff --git a/app/Validators/CreateDatasetValidator.ts b/app/Validators/CreateDatasetValidator.ts index 8fd41c6..795960e 100644 --- a/app/Validators/CreateDatasetValidator.ts +++ b/app/Validators/CreateDatasetValidator.ts @@ -73,15 +73,12 @@ export default class CreateDatasetValidator { depth_min: schema.number.optional([rules.requiredIfExists('depth_max')]), depth_max: schema.number.optional([rules.requiredIfExists('depth_min')]), }), - references: schema.array([rules.uniqueArray('value')]).members( + references: schema.array.optional([rules.uniqueArray('value')]).members( schema.object().members({ - value: schema.string({ trim: true }, [ - rules.minLength(3), - rules.maxLength(255), - ]), + value: schema.string({ trim: true }, [rules.minLength(3), rules.maxLength(255)]), type: schema.enum(Object.values(ReferenceIdentifierTypes)), relation: schema.enum(Object.values(RelationTypes)), - // language: schema.string({ trim: true }, [rules.minLength(2), rules.maxLength(255)]), + label: schema.string({ trim: true }, [rules.minLength(2), rules.maxLength(255)]), }), ), subjects: schema.array([rules.minLength(3), rules.uniqueArray('value')]).members( @@ -102,7 +99,7 @@ export default class CreateDatasetValidator { files: schema.array([rules.minLength(1)]).members( schema.file({ size: '100mb', - extnames: ['jpg', 'gif', 'png'], + extnames: ['jpg', 'gif', 'png', 'tif'], }), ), // upload: schema.object().members({ @@ -162,6 +159,12 @@ export default class CreateDatasetValidator { 'subjects.*.type.required': 'keyword type is required', 'subjects.*.language.required': 'language of keyword is required', + 'references.*.value.required': 'Additional reference value is required, if defined', + 'references.*.type.required': 'Additional reference identifier type is required', + 'references.*.relation.required': 'Additional reference relation type is required', + 'references.*.label.required': 'Additional reference label is required', + + 'files.minLength': 'At least {{ options.minLength }} file upload is required.', 'files.*.size': 'file size is to big', 'files.extnames': 'file extension is not supported', }; diff --git a/database/migrations/files_1_document_files.ts b/database/migrations/files_1_document_files.ts index 0d71f4c..044d214 100644 --- a/database/migrations/files_1_document_files.ts +++ b/database/migrations/files_1_document_files.ts @@ -11,7 +11,7 @@ export default class DocumentFiles extends BaseSchema { .foreign('document_id', 'document_files_document_id_foreign') .references('id') .inTable('documents') - .onDelete('CASCADE') // delete this when document is deleted + .onDelete('CASCADE') // delete this file when document is deleted .onUpdate('CASCADE'); table.string('path_name').notNullable(); table.string('label'); diff --git a/package-lock.json b/package-lock.json index 402fe31..ac6064f 100644 --- a/package-lock.json +++ b/package-lock.json @@ -59,7 +59,7 @@ "babel-preset-typescript-vue3": "^2.0.17", "chart.js": "^4.2.0", "eslint": "^8.32.0", - "eslint-config-prettier": "^8.6.0", + "eslint-config-prettier": "^9.0.0", "eslint-plugin-adonis": "^2.1.1", "eslint-plugin-prettier": "^5.0.0-alpha.2", "naive-ui": "^2.34.3", @@ -760,12 +760,13 @@ } }, "node_modules/@babel/code-frame": { - "version": "7.22.5", - "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.22.5.tgz", - "integrity": "sha512-Xmwn266vad+6DAqEB2A6V/CcZVp62BbwVmcOJc2RPuwih1kw02TjQvWVWlcKGbBPd+8/0V5DEkOcizRGYsspYQ==", + "version": "7.22.10", + "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.22.10.tgz", + "integrity": "sha512-/KKIMG4UEL35WmI9OlvMhurwtytjvXoFcGNrOvyG9zIzA8YmPjVtIZUf7b05+TPO7G7/GEmLHDaoCgACHl9hhA==", "dev": true, "dependencies": { - "@babel/highlight": "^7.22.5" + "@babel/highlight": "^7.22.10", + "chalk": "^2.4.2" }, "engines": { "node": ">=6.9.0" @@ -781,21 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"supports-preserve-symlinks-flag": "^1.0.0" }, @@ -15581,9 +15560,9 @@ } }, "node_modules/superagent": { - "version": "8.0.9", - "resolved": "https://registry.npmjs.org/superagent/-/superagent-8.0.9.tgz", - "integrity": "sha512-4C7Bh5pyHTvU33KpZgwrNKh/VQnvgtCSqPRfJAUdmrtSYePVzVg4E4OzsrbkhJj9O7SO6Bnv75K/F8XVZT8YHA==", + "version": "8.1.2", + "resolved": "https://registry.npmjs.org/superagent/-/superagent-8.1.2.tgz", + "integrity": "sha512-6WTxW1EB6yCxV5VFOIPQruWGHqc3yI7hEmZK6h+pyk69Lk/Ut7rLUY6W/ONF2MjBuGjvmMiIpsrVJ2vjrHlslA==", "dev": true, "dependencies": { "component-emitter": "^1.3.0", @@ -16307,9 +16286,9 @@ } }, "node_modules/tslib": { - "version": "2.6.1", - "resolved": "https://registry.npmjs.org/tslib/-/tslib-2.6.1.tgz", - "integrity": "sha512-t0hLfiEKfMUoqhG+U1oid7Pva4bbDPHYfJNiB7BiIjRkj1pyC++4N3huJfqY6aRH6VTB0rvtzQwjM4K6qpfOig==" + "version": "2.6.2", + "resolved": "https://registry.npmjs.org/tslib/-/tslib-2.6.2.tgz", + "integrity": "sha512-AEYxH93jGFPn/a2iVAwW87VuUIkR1FVUKB77NwMF7nBTDkDrrT/Hpt/IrCJ0QXhW27jTBDcf5ZY7w6RiqTMw2Q==" }, "node_modules/tsscmp": { "version": "1.0.6", @@ -16669,9 +16648,9 @@ } }, "node_modules/validator": { - "version": "13.9.0", - "resolved": "https://registry.npmjs.org/validator/-/validator-13.9.0.tgz", - "integrity": "sha512-B+dGG8U3fdtM0/aNK4/X8CXq/EcxU2WPrPEkJGslb47qyHsxmbggTWK0yEA4qnYVNF+nxNlN88o14hIcPmSIEA==", + "version": "13.11.0", + "resolved": "https://registry.npmjs.org/validator/-/validator-13.11.0.tgz", + "integrity": "sha512-Ii+sehpSfZy+At5nPdnyMhx78fEoPDkR2XW/zimHEL3MyGJQOCQ7WeP20jPYRz7ZCpcKLB21NxuXHF3bxjStBQ==", "engines": { "node": ">= 0.10" } @@ -16721,9 +16700,9 @@ } }, "node_modules/vue-facing-decorator": { - "version": "3.0.0", - "resolved": "https://registry.npmjs.org/vue-facing-decorator/-/vue-facing-decorator-3.0.0.tgz", - "integrity": "sha512-NnbFHlJCYzQv8Mx9ehm486NLxidx/KeqbSDgi4V9kLXakLIijzLHqRWMpuEWW4hsQFxRh3bTtPCTCZMP2OL+4Q==", + "version": "3.0.2", + "resolved": "https://registry.npmjs.org/vue-facing-decorator/-/vue-facing-decorator-3.0.2.tgz", + "integrity": "sha512-hwOWIblWLBovaCHkNvqp2XTmaVmY8ZE7JcnkwlH9GZz0ZETZyN/O3kmZSmNVnOcRVG/ZOFhVdiBivozhaZxInA==", "dev": true, "peerDependencies": { "vue": "^3.0.0" diff --git a/package.json b/package.json index 845c1a8..a51b0f3 100644 --- a/package.json +++ b/package.json @@ -41,7 +41,7 @@ "babel-preset-typescript-vue3": "^2.0.17", "chart.js": "^4.2.0", "eslint": "^8.32.0", - "eslint-config-prettier": "^8.6.0", + "eslint-config-prettier": "^9.0.0", "eslint-plugin-adonis": "^2.1.1", "eslint-plugin-prettier": "^5.0.0-alpha.2", "naive-ui": "^2.34.3", diff --git a/resources/js/Pages/Submitter/Dataset/Create.vue b/resources/js/Pages/Submitter/Dataset/Create.vue index faf20e7..bb31a0a 100644 --- a/resources/js/Pages/Submitter/Dataset/Create.vue +++ b/resources/js/Pages/Submitter/Dataset/Create.vue @@ -907,26 +907,33 @@ Removes a selected keyword - +
- - - - - + + + + +
Value of the identifierTypeRelationLabelValueTypeRelationLabel
- + + +
+ {{ form.errors[`references.${index}.value`].join(', ') }} +
+ + 		+ :options="referenceIdentifierTypes" placeholder="[type]">
{{ form.errors[`references.${index}.type`].join(', ') }} @@ -940,8 +947,7 @@ Removes a selected keyword 'data-vv-scope' => 'step-2']) !!} --> + :options="relationTypes" placeholder="[relation type]">
{{ form.errors[`references.${index}.relation`].join(', ') }} @@ -949,7 +955,14 @@ Removes a selected keyword
- + + +
+ {{ form.errors[`references.${index}.label`].join(', ') }} +
+