tethys.backend/app/Library/Utils/Index.ts

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import Dataset from 'App/Models/Dataset';
import { Client } from '@opensearch-project/opensearch';
import { create } from 'xmlbuilder2';
import { transform } from 'saxon-js';
import XmlModel from 'App/Library/XmlModel';
import { XMLBuilder } from 'xmlbuilder2/lib/interfaces';
import Logger from '@ioc:Adonis/Core/Logger';
import { readFileSync } from 'fs';
import { DateTime } from 'luxon';
// import Config from '@ioc:Adonis/Core/Config';
import { getDomain } from 'App/Utils/utility-functions';
// const opensearchNode = process.env.OPENSEARCH_HOST || 'localhost';
// const client = new Client({ node: `http://${opensearchNode}` }); // replace with your OpenSearch endpoint
export default {
// opensearchNode: process.env.OPENSEARCH_HOST || 'localhost',
client: new Client({ node: `http://${process.env.OPENSEARCH_HOST || 'localhost'}` }), // replace with your OpenSearch endpoint
async getDoiRegisterString(dataset: Dataset): Promise<string | undefined> {
try {
const proc = readFileSync('public/assets2/doi_datacite.sef.json');
const xsltParameter = {};
let xml = create({ version: '1.0', encoding: 'UTF-8', standalone: true }, '<root></root>');
const datasetNode = xml.root().ele('Dataset');
await createXmlRecord(dataset, datasetNode);
const xmlString = xml.end({ prettyPrint: false });
// set timestamp
const date = DateTime.now();
const unixTimestamp = date.toUnixInteger();
xsltParameter['unixTimestamp'] = unixTimestamp;
// set prefix
let prefix = '';
// let base_domain = '';
// const datacite_environment = process.env.DATACITE_ENVIRONMENT || 'debug';
// if (datacite_environment === 'debug') {
// prefix = process.env.DATACITE_TEST_PREFIX || '';
// base_domain = process.env.TEST_BASE_DOMAIN || '';
// } else if (datacite_environment === 'production') {
// prefix = process.env.DATACITE_PREFIX || '';
// base_domain = process.env.BASE_DOMAIN || '';
// }
prefix = process.env.DATACITE_PREFIX || '';
xsltParameter['prefix'] = prefix;
const repIdentifier = 'tethys';
xsltParameter['repIdentifier'] = repIdentifier;
let xmlOutput; // = xmlString;
try {
const result = await transform({
// stylesheetFileName: `${config.TMP_BASE_DIR}/data-quality/rules/iati.sef.json`,
stylesheetText: proc,
destination: 'serialized',
// sourceFileName: sourceFile,
sourceText: xmlString,
stylesheetParams: xsltParameter,
// logLevel: 10,
});
xmlOutput = result.principalResult;
} catch (error) {
Logger.error('An error occurred while creating the user', error.message);
}
return xmlOutput;
} catch (error) {
Logger.error(`An error occurred while indexing datsaet with publish_id ${dataset.publish_id}.`);
}
},
async indexDocument(dataset: Dataset, index_name: string): Promise<void> {
try {
const proc = readFileSync('public/assets2/solr.sef.json');
const doc: string = await this.getTransformedString(dataset, proc);
let document = JSON.parse(doc);
await this.client.index({
id: dataset.publish_id?.toString(),
index: index_name,
body: document,
refresh: true,
});
Logger.info(`dataset with publish_id ${dataset.publish_id} successfully indexed`);
} catch (error) {
Logger.error(`An error occurred while indexing datsaet with publish_id ${dataset.publish_id}.`);
}
},
async getTransformedString(dataset, proc): Promise<string> {
let xml = create({ version: '1.0', encoding: 'UTF-8', standalone: true }, '<root></root>');
const datasetNode = xml.root().ele('Dataset');
await createXmlRecord(dataset, datasetNode);
const xmlString = xml.end({ prettyPrint: false });
try {
const result = await transform({
stylesheetText: proc,
destination: 'serialized',
sourceText: xmlString,
});
return result.principalResult;
} catch (error) {
Logger.error(`An error occurred while creating the user, error: ${error.message},`);
return '';
}
},
};
/**
* Return the default global focus trap stack
*
* @return {import('focus-trap').FocusTrap[]}
*/
// export const indexDocument = async (dataset: Dataset, index_name: string, proc: Buffer): Promise<void> => {
// try {
// const doc = await getJsonString(dataset, proc);
// let document = JSON.parse(doc);
// await client.index({
// id: dataset.publish_id?.toString(),
// index: index_name,
// body: document,
// refresh: true,
// });
// Logger.info(`dataset with publish_id ${dataset.publish_id} successfully indexed`);
// } catch (error) {
// Logger.error(`An error occurred while indexing datsaet with publish_id ${dataset.publish_id}.`);
// }
// };
// const getJsonString = async (dataset, proc): Promise<string> => {
// let xml = create({ version: '1.0', encoding: 'UTF-8', standalone: true }, '<root></root>');
// const datasetNode = xml.root().ele('Dataset');
// await createXmlRecord(dataset, datasetNode);
// const xmlString = xml.end({ prettyPrint: false });
// try {
// const result = await transform({
// stylesheetText: proc,
// destination: 'serialized',
// sourceText: xmlString,
// });
// return result.principalResult;
// } catch (error) {
// Logger.error(`An error occurred while creating the user, error: ${error.message},`);
// return '';
// }
// };
const createXmlRecord = async (dataset: Dataset, datasetNode: XMLBuilder): Promise<void> => {
const domNode = await getDatasetXmlDomNode(dataset);
if (domNode) {
// add frontdoor url and data-type
dataset.publish_id && addLandingPageAttribute(domNode, dataset.publish_id.toString());
addSpecInformation(domNode, 'data-type:' + dataset.type);
if (dataset.collections) {
for (const coll of dataset.collections) {
const collRole = coll.collectionRole;
addSpecInformation(domNode, collRole.oai_name + ':' + coll.number);
}
}
datasetNode.import(domNode);
}
};
const getDatasetXmlDomNode = async (dataset: Dataset): Promise<XMLBuilder | null> => {
const xmlModel = new XmlModel(dataset);
// xmlModel.setModel(dataset);
xmlModel.excludeEmptyFields();
xmlModel.caching = true;
// const cache = dataset.xmlCache ? dataset.xmlCache : null;
// dataset.load('xmlCache');
await dataset.load('xmlCache');
if (dataset.xmlCache) {
xmlModel.xmlCache = dataset.xmlCache;
}
// return cache.getDomDocument();
const domDocument: XMLBuilder | null = await xmlModel.getDomDocument();
return domDocument;
};
const addLandingPageAttribute = (domNode: XMLBuilder, dataid: string) => {
const baseDomain = process.env.OAI_BASE_DOMAIN || 'localhost';
const url = 'https://' + getDomain(baseDomain) + '/dataset/' + dataid;
// add attribute du dataset xml element
domNode.att('landingpage', url);
};
const addSpecInformation= (domNode: XMLBuilder, information: string) => {
domNode.ele('SetSpec').att('Value', information);
};