diff --git a/assets/oai2_style.xslt b/assets/oai2_style.xslt index 0555416..cb69953 100755 --- a/assets/oai2_style.xslt +++ b/assets/oai2_style.xslt @@ -65,7 +65,7 @@ - + TETHYS OAI 2.0 Request Results @@ -76,7 +76,7 @@ --> - + diff --git a/datasetxml2oai-pmh.xslt b/datasetxml2oai-pmh.xslt index c99a946..396f408 100755 --- a/datasetxml2oai-pmh.xslt +++ b/datasetxml2oai-pmh.xslt @@ -8,8 +8,6 @@ xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/ http://www.openarchives.org/OAI/2.0/OAI-PMH.xsd"> - - @@ -47,11 +45,56 @@ + + !"#$%&'()*+,-./0123456789:;<=>?@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefghijklmnopqrstuvwxyz{|}~ +  ¡¢£¤¥¦§¨©ª«¬­®¯°±²³´µ¶·¸¹º»¼½¾¿ÀÁÂÃÄÅÆÇÈÉÊËÌÍÎÏÐÑÒÓÔÕÖ×ØÙÚÛÜÝÞßàáâãäåæçèéêëìíîïðñòóôõö÷øùúûüýþÿ + + !'()*-.0123456789ABCDEFGHIJKLMNOPQRSTUVWXYZ_abcdefghijklmnopqrstuvwxyz~ + 0123456789ABCDEF + + + + + + + + + + + + + + + + + + + + Warning: string contains a character that is out of range! Substituting "?". + 63 + + + + + + + + + + + + + + + + + - type="text/xsl" href="../assets/oai2_style.xslt" title="Defaultstyle" + type="text/xsl" href="assets/oai2_style.xslt" @@ -416,7 +459,10 @@ --> - + + @@ -553,21 +599,23 @@ - + + + + --> - + + @@ -673,7 +721,10 @@ - + + diff --git a/package.json b/package.json index 3311aaa..73b4f96 100644 --- a/package.json +++ b/package.json @@ -27,7 +27,6 @@ "dependencies": { "@overnightjs/core": "^1.7.6", "body-parser": "^1.20.0", - "cd": "^0.3.3", "core-js": "^3.25.5", "cors": "^2.8.5", "dayjs": "^1.11.5", diff --git a/src/app.ts b/src/app.ts index 672b371..bb9991c 100644 --- a/src/app.ts +++ b/src/app.ts @@ -40,14 +40,14 @@ export class App extends Server { next(); }); - // this.app.use(bodyParser.json()); + // this.app.use(bodyParser.json()); // for parsing application/json this.app.use(bodyParser.json({ limit: "100mb" })); // for parsing application/xwww- this.app.use(bodyParser.urlencoded({ limit: "50mb", extended: true })); - // this.app.use(forms.array()); + // this.app.use(forms.array()); // for parsing multipart/form-data = uploads - // this.app.use(upload.array()); + // this.app.use(upload.array()); } private boostrap(): void { diff --git a/src/controllers/datasetxml2oai.sef.json b/src/controllers/datasetxml2oai.sef.json index c190f41..a380827 100644 --- a/src/controllers/datasetxml2oai.sef.json +++ b/src/controllers/datasetxml2oai.sef.json @@ -1 +1 @@ -{"N":"package","version":"30","packageVersion":"1","saxonVersion":"SaxonJS 2.5","target":"JS","targetVersion":"2","name":"TOP-LEVEL","relocatable":"false","buildDateTime":"2022-12-02T15:12:46.183+01:00","ns":"xml=~ =http://www.openarchives.org/OAI/2.0/ xsl=~ dc=http://purl.org/dc/elements/1.1/ oai_dc=http://www.openarchives.org/OAI/2.0/oai_dc/ xsi=~","C":[{"N":"co","id":"0","uniform":"true","binds":"25","C":[{"N":"template","flags":"os","module":"oai_datacite.xslt","slots":"200","baseUri":"file:///home/administrator/tethys.api/assets/oai_datacite.xslt","name":"Q{}RdrDate2","line":"133","ns":"xml=~ =http://datacite.org/schema/kernel-4 xsl=~ oai_dc=http://www.openarchives.org/OAI/2.0/oai_dc/ dc=http://purl.org/dc/elements/1.1/ xsi=~","expand-text":"false","version":"1.0","sType":"* ","C":[{"N":"sequence","role":"body","sType":"* ","C":[{"N":"choose","sType":"? 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import { Dataset, Project, License, Collection, CollectionRole } from "../models/init-models"; import Logger from "jet-logger"; import { BadOaiModelException, OaiModelException } from "../exceptions/OaiModelException"; -import PageNotFoundException from "../exceptions/PageNotFoundException"; import { OaiErrorCodes, OaiModelError } from "../exceptions/OaiErrorCodes"; import XmlModel from "../library/XmlModel"; import Configuration from "../library/oai/OaiConfiguration"; @@ -19,6 +18,7 @@ import ResumptionToken from "../library/oai/ResumptionToken"; import TokenWorker from "../library/oai/TokenWorker"; import utc from "dayjs/plugin/utc"; import timezone from "dayjs/plugin/timezone"; +import { getDomain } from "../utils/utility-functions"; interface XslTParameter { [key: string]: any; @@ -102,7 +102,7 @@ export class OaiController { await this.handleRequest(oaiRequest, request); } catch (error) { if (error instanceof OaiModelException) { - let code = error.oaiCode; + const code = error.oaiCode; let oaiErrorCode: string | undefined = "Unknown oai error code " + code; if (OaiModelError.has(error.oaiCode) && OaiModelError.get(code) != undefined) { oaiErrorCode = OaiModelError.get(error.oaiCode); @@ -291,7 +291,7 @@ export class OaiController { const dataset = await Dataset.findOne({ where: { publish_id: dataId }, - include: ["xmlCache"], + include: ["xmlCache", "collections"], // order: ['server_date_published'], }); if (!dataset || !dataset.publish_id) { @@ -683,29 +683,11 @@ export class OaiController { private addLandingPageAttribute(domNode: XMLBuilder, dataid: string) { const baseDomain = process.env.BASE_DOMAIN || "localhost"; - const url = "https://" + this.getDomain(baseDomain) + "/dataset/" + dataid; + const url = "https://" + getDomain(baseDomain) + "/dataset/" + dataid; // add attribute du dataset xml element domNode.att("landingpage", url); } - private getDomain(host: string): string { - // $myhost = strtolower(trim($host)); - let myHost: string = host.trim().toLocaleLowerCase(); - // $count = substr_count($myhost, '.'); - const count: number = myHost.split(",").length - 1; - - if (count == 2) { - const words = myHost.split("."); - if (words[1].length > 3) { - myHost = myHost.split(".", 2)[1]; - } - } else if (count > 2) { - myHost = this.getDomain(myHost.split(".", 2)[1]); - } - myHost = myHost.replace(new RegExp(/^.*:\/\//i, "g"), ""); - return myHost; - } - private getDocumentIdByIdentifier(oaiIdentifier: string): string { const identifierParts: string[] = oaiIdentifier.split(":"); // explode(":", $oaiIdentifier); const dataId: string = identifierParts[2]; @@ -735,20 +717,22 @@ export class OaiController { private async createXmlRecord(dataset: Dataset, datasetNode: XMLBuilder) { const domNode = await this.getDatasetXmlDomNode(dataset); - // add frontdoor url and data-type - // if (dataset.publish_id) { - dataset.publish_id && this.addLandingPageAttribute(domNode, dataset.publish_id.toString()); - // } - this.addSpecInformation(domNode, "data-type:" + dataset.type); + if (domNode) { + // add frontdoor url and data-type + // if (dataset.publish_id) { + dataset.publish_id && this.addLandingPageAttribute(domNode, dataset.publish_id.toString()); + // } + this.addSpecInformation(domNode, "data-type:" + dataset.type); - if (dataset.collections) { - for (const coll of dataset.collections) { - const collRole = await coll.getCollectionRole(); - this.addSpecInformation(domNode, collRole.oai_name + ":" + coll.number); + if (dataset.collections) { + for (const coll of dataset.collections) { + const collRole = await coll.getCollectionRole(); + this.addSpecInformation(domNode, collRole.oai_name + ":" + coll.number); + } } - } - datasetNode.import(domNode); + datasetNode.import(domNode); + } } private async getDatasetXmlDomNode(dataset: Dataset) { diff --git a/src/library/XmlModel.ts b/src/library/XmlModel.ts index 168961a..08f791c 100644 --- a/src/library/XmlModel.ts +++ b/src/library/XmlModel.ts @@ -115,32 +115,33 @@ export default class XmlModel { } else { //create domDocument during runtime // domDocument = $this->strategy->getDomDocument(); - domDocument = create({ version: "1.0", encoding: "UTF-8", standalone: true }, ""); + // domDocument = create({ version: "1.0", encoding: "UTF-8", standalone: true }, ""); + return null; } - //if caching isn't wanted return only dom Document - if (this._caching != true) { - return domDocument; - //otherwise caching is desired: - // save xml cache to db and return domDocument - } else { - // save new DocumentXmlCache - if (!this.cache) { - this.cache = new DocumentXmlCache(); - this.cache.document_id = dataset.id; - } - // if (!this.cache.document_id) { - // this.cache.document_id = dataset.id; - // } - this.cache.xml_version = 1; // (int)$this->strategy->getVersion(); - this.cache.server_date_modified = dayjs(dataset.server_date_modified).format("YYYY-MM-DD HH:mm:ss"); - this.cache.xml_data = domDocument.end(); + // //if caching isn't wanted return only dom Document + // if (this._caching != true) { + // return domDocument; + // //otherwise caching is desired: + // // save xml cache to db and return domDocument + // } else { + // // save new DocumentXmlCache + // if (!this.cache) { + // this.cache = new DocumentXmlCache(); + // this.cache.document_id = dataset.id; + // } + // // if (!this.cache.document_id) { + // // this.cache.document_id = dataset.id; + // // } + // this.cache.xml_version = 1; // (int)$this->strategy->getVersion(); + // this.cache.server_date_modified = dayjs(dataset.server_date_modified).format("YYYY-MM-DD HH:mm:ss"); + // this.cache.xml_data = domDocument.end(); - //save xml cache - this.cache.save(); - // return newly created xml cache - return domDocument; - } + // //save xml cache + // this.cache.save(); + // // return newly created xml cache + // return domDocument; + // } } private async getDomDocumentFromXmlCache(): Promise { diff --git a/src/models/Dataset.ts b/src/models/Dataset.ts index 27c2ef1..06cef56 100644 --- a/src/models/Dataset.ts +++ b/src/models/Dataset.ts @@ -79,7 +79,7 @@ class Dataset extends Model, InferCreationAttributes; // declare static associations: { - + // }; // getters that are not attributes should be tagged using NonAttribute diff --git a/src/models/init-models.js b/src/models/init-models.js index 28b1c5d..fb73d37 100644 --- a/src/models/init-models.js +++ b/src/models/init-models.js @@ -229,8 +229,8 @@ export function initModels() { }); // dataset and collections - //licences - const DatasetCollection = sequelizeConnection.define( + //licences + const DatasetCollection = sequelizeConnection.define( "link_documents_collections", {}, { diff --git a/src/utils/utility-functions.ts b/src/utils/utility-functions.ts new file mode 100644 index 0000000..8a0c9fc --- /dev/null +++ b/src/utils/utility-functions.ts @@ -0,0 +1,21 @@ +export function sum(a: number, b: number): number { + return a + b; +} + +export function getDomain(host: string): string { + // $myhost = strtolower(trim($host)); + let myHost: string = host.trim().toLocaleLowerCase(); + // $count = substr_count($myhost, '.'); + const count: number = myHost.split(",").length - 1; + + if (count == 2) { + const words = myHost.split("."); + if (words[1].length > 3) { + myHost = myHost.split(".", 2)[1]; + } + } else if (count > 2) { + myHost = getDomain(myHost.split(".", 2)[1]); + } + myHost = myHost.replace(new RegExp(/^.*:\/\//i, "g"), ""); + return myHost; +}